diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/py-pysam/package.py')
-rw-r--r-- | var/spack/repos/builtin/packages/py-pysam/package.py | 37 |
1 files changed, 13 insertions, 24 deletions
diff --git a/var/spack/repos/builtin/packages/py-pysam/package.py b/var/spack/repos/builtin/packages/py-pysam/package.py index 7c3cccd21a..513a41f778 100644 --- a/var/spack/repos/builtin/packages/py-pysam/package.py +++ b/var/spack/repos/builtin/packages/py-pysam/package.py @@ -1,27 +1,8 @@ -############################################################################## -# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. -# Produced at the Lawrence Livermore National Laboratory. +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. # -# This file is part of Spack. -# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. -# LLNL-CODE-647188 -# -# For details, see https://github.com/spack/spack -# Please also see the NOTICE and LICENSE files for our notice and the LGPL. -# -# This program is free software; you can redistribute it and/or modify -# it under the terms of the GNU Lesser General Public License (as -# published by the Free Software Foundation) version 2.1, February 1999. -# -# This program is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and -# conditions of the GNU Lesser General Public License for more details. -# -# You should have received a copy of the GNU Lesser General Public -# License along with this program; if not, write to the Free Software -# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA -############################################################################## +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + from spack import * @@ -30,10 +11,18 @@ class PyPysam(PythonPackage): sets.""" homepage = "https://pypi.python.org/pypi/pysam" - url = "https://pypi.io/packages/source/p/pysam/pysam-0.11.2.2.tar.gz" + url = "https://github.com/pysam-developers/pysam/archive/v0.14.1.tar.gz" + version('0.14.1', 'ad88fa5bbcc0fdf4a936734691d9c9d1') + version('0.13', 'a9b502dd1a7e6403e35e6972211688a2') version('0.11.2.2', '56230cd5f55b503845915b76c22d620a') + version('0.7.7', 'eaf9f37cbccc5e2708754d045909c1a0') depends_on('py-setuptools', type='build') depends_on('py-cython@0.21:', type='build') + depends_on('curl') depends_on('bcftools') + depends_on('htslib') + depends_on('samtools') + + depends_on('htslib@:1.6', when='@:0.13') |