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Diffstat (limited to 'var/spack/repos/builtin/packages/r-abaenrichment/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-abaenrichment/package.py | 58 |
1 files changed, 29 insertions, 29 deletions
diff --git a/var/spack/repos/builtin/packages/r-abaenrichment/package.py b/var/spack/repos/builtin/packages/r-abaenrichment/package.py index 70b8c8e7d8..7dfded3dfd 100644 --- a/var/spack/repos/builtin/packages/r-abaenrichment/package.py +++ b/var/spack/repos/builtin/packages/r-abaenrichment/package.py @@ -9,36 +9,36 @@ from spack.package import * class RAbaenrichment(RPackage): """Gene expression enrichment in human brain regions. - The package ABAEnrichment is designed to test for enrichment of user - defined candidate genes in the set of expressed genes in different human - brain regions. The core function 'aba_enrich' integrates the expression - of the candidate gene set (averaged across donors) and the structural - information of the brain using an ontology, both provided by the Allen - Brain Atlas project. 'aba_enrich' interfaces the ontology enrichment - software FUNC to perform the statistical analyses. Additional functions - provided in this package like 'get_expression' and 'plot_expression' - facilitate exploring the expression data, and besides the standard - candidate vs. background gene set enrichment, also three additional - tests are implemented, e.g. for cases when genes are ranked instead of - divided into candidate and background.""" + The package ABAEnrichment is designed to test for enrichment of user + defined candidate genes in the set of expressed genes in different human + brain regions. The core function 'aba_enrich' integrates the expression + of the candidate gene set (averaged across donors) and the structural + information of the brain using an ontology, both provided by the Allen + Brain Atlas project. 'aba_enrich' interfaces the ontology enrichment + software FUNC to perform the statistical analyses. Additional functions + provided in this package like 'get_expression' and 'plot_expression' + facilitate exploring the expression data, and besides the standard + candidate vs. background gene set enrichment, also three additional + tests are implemented, e.g. for cases when genes are ranked instead of + divided into candidate and background.""" bioc = "ABAEnrichment" - version('1.26.0', commit='33df9e162aec07e2aae92cc058cbfb33720ba4b4') - version('1.24.0', commit='5d20752263ae8f18ea5f5a6cfbdd5921a0f236d7') - version('1.20.0', commit='608433a0b07e6dd99915dc536a038d960f1be1d5') - version('1.14.1', commit='e1ebfb5de816b924af16675a5ba9ed1a6b527b23') - version('1.12.0', commit='1320e932deafd71d67c7a6f758d15b00d6d7f7d7') - version('1.10.0', commit='15f33ccb694a91d2d2067c937682c4bc952def6c') - version('1.8.0', commit='cb8155ee9a04fb55b2a2e8c23df7c0be15bb2624') - version('1.6.0', commit='d2a0467dcb7aa6e103e3b83dccd6510b0e142ac1') + version("1.26.0", commit="33df9e162aec07e2aae92cc058cbfb33720ba4b4") + version("1.24.0", commit="5d20752263ae8f18ea5f5a6cfbdd5921a0f236d7") + version("1.20.0", commit="608433a0b07e6dd99915dc536a038d960f1be1d5") + version("1.14.1", commit="e1ebfb5de816b924af16675a5ba9ed1a6b527b23") + version("1.12.0", commit="1320e932deafd71d67c7a6f758d15b00d6d7f7d7") + version("1.10.0", commit="15f33ccb694a91d2d2067c937682c4bc952def6c") + version("1.8.0", commit="cb8155ee9a04fb55b2a2e8c23df7c0be15bb2624") + version("1.6.0", commit="d2a0467dcb7aa6e103e3b83dccd6510b0e142ac1") - depends_on('r+X', type=('build', 'run')) - depends_on('r@3.2:', type=('build', 'run')) - depends_on('r@3.4:', type=('build', 'run'), when='@1.8.0:') - depends_on('r-rcpp@0.11.5:', type=('build', 'run')) - depends_on('r-gplots@2.14.2:', type=('build', 'run')) - depends_on('r-gtools@3.5.0:', type=('build', 'run')) - depends_on('r-abadata@0.99.2:', type=('build', 'run')) - depends_on('r-data-table@1.10.4:', type=('build', 'run'), when='@1.8.0:') - depends_on('r-gofuncr@1.1.2:', type=('build', 'run'), when='@1.12.0:') + depends_on("r+X", type=("build", "run")) + depends_on("r@3.2:", type=("build", "run")) + depends_on("r@3.4:", type=("build", "run"), when="@1.8.0:") + depends_on("r-rcpp@0.11.5:", type=("build", "run")) + depends_on("r-gplots@2.14.2:", type=("build", "run")) + depends_on("r-gtools@3.5.0:", type=("build", "run")) + depends_on("r-abadata@0.99.2:", type=("build", "run")) + depends_on("r-data-table@1.10.4:", type=("build", "run"), when="@1.8.0:") + depends_on("r-gofuncr@1.1.2:", type=("build", "run"), when="@1.12.0:") |