diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-acde/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-acde/package.py | 36 |
1 files changed, 21 insertions, 15 deletions
diff --git a/var/spack/repos/builtin/packages/r-acde/package.py b/var/spack/repos/builtin/packages/r-acde/package.py index 4b49104897..e44a2c2e4d 100644 --- a/var/spack/repos/builtin/packages/r-acde/package.py +++ b/var/spack/repos/builtin/packages/r-acde/package.py @@ -7,21 +7,27 @@ from spack import * class RAcde(RPackage): - """This package provides a multivariate inferential analysis method - for detecting differentially expressed genes in gene expression data. - It uses artificial components, close to the data's principal - components but with an exact interpretation in terms of differential - genetic expression, to identify differentially expressed genes while - controlling the false discovery rate (FDR). The methods on this - package are described in the vignette or in the article - 'Multivariate Method for Inferential Identification of - Differentially Expressed Genes in Gene Expression Experiments' by - J. P. Acosta, L. Lopez-Kleine and S. Restrepo - (2015, pending publication).""" + """Artificial Components Detection of Differentially Expressed Genes. - homepage = "https://www.bioconductor.org/packages/acde/" - url = "https://bioconductor.org/packages/release/bioc/src/contrib/acde_1.14.0.tar.gz" + This package provides a multivariate inferential analysis method for + detecting differentially expressed genes in gene expression data. It + uses artificial components, close to the data's principal components but + with an exact interpretation in terms of differential genetic + expression, to identify differentially expressed genes while controlling + the false discovery rate (FDR). The methods on this package are + described in the vignette or in the article 'Multivariate Method for + Inferential Identification of Differentially Expressed Genes in Gene + Expression Experiments' by J. P. Acosta, L. Lopez-Kleine and S. Restrepo + (2015, pending publication).""" - version('1.14.0', sha256='e8d9ad688610d4b72cab729141dc46fce580c97128d929885336bb138345b788') + homepage = "https://bioconductor.org/packages/acde" + git = "https://git.bioconductor.org/packages/acde.git" - depends_on('r-boot', type=('build', 'run')) + version('1.14.0', commit='6017c7436a46f186b2a3cea9d2b93274f6dd3417') + version('1.12.0', commit='f6ce5926ac915c2d73436f47daf7f9791645dad4') + version('1.10.0', commit='2c303dec45f3c70bf333a6eacae568a08d5ca010') + version('1.8.0', commit='f7fc3e1dce958445f920d3b28b56abde70bfb9de') + version('1.6.0', commit='244c81f435a077bf7895ea565fa6695e8b079f67') + + depends_on('r@3.3:', type=('build', 'run')) + depends_on('r-boot@1.3:', type=('build', 'run')) |