diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-aneufinder/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-aneufinder/package.py | 23 |
1 files changed, 17 insertions, 6 deletions
diff --git a/var/spack/repos/builtin/packages/r-aneufinder/package.py b/var/spack/repos/builtin/packages/r-aneufinder/package.py index 9dc0384bf9..f623d35256 100644 --- a/var/spack/repos/builtin/packages/r-aneufinder/package.py +++ b/var/spack/repos/builtin/packages/r-aneufinder/package.py @@ -7,21 +7,28 @@ from spack import * class RAneufinder(RPackage): - """This package implements functions for CNV calling, plotting, - export and analysis from whole-genome single cell sequencing data.""" + """Analysis of Copy Number Variation in Single-Cell-Sequencing Data. - homepage = "https://www.bioconductor.org/packages/AneuFinder/" + AneuFinder implements functions for copy-number detection, breakpoint + detection, and karyotype and heterogeneity analysis in single-cell whole + genome sequencing and strand-seq data.""" + + homepage = "https://bioconductor.org/packages/AneuFinder" git = "https://git.bioconductor.org/packages/AneuFinder.git" + version('1.12.1', commit='e788fd0c864f0bf0abd93df44c6d42f82eb37e0e') + version('1.10.2', commit='56578ae69abac93dfea6bcac1fc205b14b6ba9dd') + version('1.8.0', commit='36a729d244add5aafbe21c37a1baaea6a50354d3') + version('1.6.0', commit='0cfbdd1951fb4df5622e002260cfa86294d65d1d') version('1.4.0', commit='e5bdf4d5e4f84ee5680986826ffed636ed853b8e') - depends_on('r@3.4.0:3.4.9', when='@1.4.0') + depends_on('r@3.3:', type=('build', 'run')) depends_on('r-genomicranges', type=('build', 'run')) depends_on('r-cowplot', type=('build', 'run')) depends_on('r-aneufinderdata', type=('build', 'run')) depends_on('r-foreach', type=('build', 'run')) depends_on('r-doparallel', type=('build', 'run')) - depends_on('r-biocgenerics', type=('build', 'run')) + depends_on('r-biocgenerics', when='@1.4.0:1.6.0', type=('build', 'run')) depends_on('r-s4vectors', type=('build', 'run')) depends_on('r-genomeinfodb', type=('build', 'run')) depends_on('r-iranges', type=('build', 'run')) @@ -33,6 +40,10 @@ class RAneufinder(RPackage): depends_on('r-ggplot2', type=('build', 'run')) depends_on('r-reshape2', type=('build', 'run')) depends_on('r-ggdendro', type=('build', 'run')) + depends_on('r-ggrepel', type=('build', 'run')) depends_on('r-reordercluster', type=('build', 'run')) depends_on('r-mclust', type=('build', 'run')) - depends_on('r-ggrepel', type=('build', 'run')) + + depends_on('r-ecp', when='@1.8.0:', type=('build', 'run')) + + depends_on('r@3.5:', when='@1.10.2:', type=('build', 'run')) |