diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-bamsignals/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-bamsignals/package.py | 9 |
1 files changed, 6 insertions, 3 deletions
diff --git a/var/spack/repos/builtin/packages/r-bamsignals/package.py b/var/spack/repos/builtin/packages/r-bamsignals/package.py index b45fec7c27..5deebb1697 100644 --- a/var/spack/repos/builtin/packages/r-bamsignals/package.py +++ b/var/spack/repos/builtin/packages/r-bamsignals/package.py @@ -7,7 +7,7 @@ from spack import * class RBamsignals(RPackage): - """Extract read count signals from bam files. + """Extract read count signals from bam files This package allows to efficiently obtain count vectors from indexed bam files. It counts the number of reads in given genomic ranges and it @@ -17,6 +17,7 @@ class RBamsignals(RPackage): homepage = "https://bioconductor.org/packages/bamsignals" git = "https://git.bioconductor.org/packages/bamsignals.git" + version('1.22.0', commit='5f533969c84212406bcb3ebf725ebb6d77e9947a') version('1.16.0', commit='dba9a4ae1613d2700f122ade1e9b90ca8fce5657') version('1.14.0', commit='3107d3a35830e879eeddf127a81016ea1ca9b53d') version('1.12.1', commit='06b6282df377cf9db58e8016be4ac8ddcc960939') @@ -30,7 +31,9 @@ class RBamsignals(RPackage): depends_on('r-genomicranges', type=('build', 'run')) depends_on('r-zlibbioc', type=('build', 'run')) depends_on('r-rhtslib', type=('build', 'run')) - depends_on('r-rhtslib@1.12.1:', when='@1.12.1:', type=('build', 'run')) - depends_on('r-rhtslib@1.13.1:', when='@1.14.0:', type=('build', 'run')) + depends_on('gmake', type='build') + + # this is no listed but is needed + depends_on('curl') |