diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-bamsignals/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-bamsignals/package.py | 24 |
1 files changed, 17 insertions, 7 deletions
diff --git a/var/spack/repos/builtin/packages/r-bamsignals/package.py b/var/spack/repos/builtin/packages/r-bamsignals/package.py index c296426285..78992b44db 100644 --- a/var/spack/repos/builtin/packages/r-bamsignals/package.py +++ b/var/spack/repos/builtin/packages/r-bamsignals/package.py @@ -7,20 +7,30 @@ from spack import * class RBamsignals(RPackage): - """This package allows to efficiently obtain count vectors - from indexed bam files. It counts the number of reads in given - genomic ranges and it computes reads profiles and coverage - profiles. It also handles paired-end data.""" + """Extract read count signals from bam files. - homepage = "https://www.bioconductor.org/packages/bamsignals/" + This package allows to efficiently obtain count vectors from indexed bam + files. It counts the number of reads in given genomic ranges and it + computes reads profiles and coverage profiles. It also handles paired- + end data.""" + + homepage = "https://bioconductor.org/packages/bamsignals" git = "https://git.bioconductor.org/packages/bamsignals.git" + version('1.16.0', commit='dba9a4ae1613d2700f122ade1e9b90ca8fce5657') + version('1.14.0', commit='3107d3a35830e879eeddf127a81016ea1ca9b53d') + version('1.12.1', commit='06b6282df377cf9db58e8016be4ac8ddcc960939') + version('1.10.0', commit='7499312ce71e8680680eda10b49d7dff682fc776') version('1.8.0', commit='b123b83e8e026c9ec91209d4498aff3e95a5de23') - depends_on('r@3.4.0:3.4.9', when='@1.8.0') + depends_on('r@3.2.0:', type=('build', 'run')) depends_on('r-biocgenerics', type=('build', 'run')) - depends_on('r-rcpp', type=('build', 'run')) + depends_on('r-rcpp@0.10.6:', type=('build', 'run')) depends_on('r-iranges', type=('build', 'run')) depends_on('r-genomicranges', type=('build', 'run')) depends_on('r-zlibbioc', type=('build', 'run')) depends_on('r-rhtslib', type=('build', 'run')) + + depends_on('r-rhtslib@1.12.1:', when='@1.12.1:', type=('build', 'run')) + + depends_on('r-rhtslib@1.13.1:', when='@1.14.0:', type=('build', 'run')) |