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-rw-r--r--var/spack/repos/builtin/packages/r-biobase/package.py41
1 files changed, 12 insertions, 29 deletions
diff --git a/var/spack/repos/builtin/packages/r-biobase/package.py b/var/spack/repos/builtin/packages/r-biobase/package.py
index 035d0ddcad..015522735c 100644
--- a/var/spack/repos/builtin/packages/r-biobase/package.py
+++ b/var/spack/repos/builtin/packages/r-biobase/package.py
@@ -1,40 +1,23 @@
-##############################################################################
-# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
-# Produced at the Lawrence Livermore National Laboratory.
+# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
-# This file is part of Spack.
-# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
-# LLNL-CODE-647188
-#
-# For details, see https://github.com/spack/spack
-# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
-#
-# This program is free software; you can redistribute it and/or modify
-# it under the terms of the GNU Lesser General Public License (as
-# published by the Free Software Foundation) version 2.1, February 1999.
-#
-# This program is distributed in the hope that it will be useful, but
-# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
-# conditions of the GNU Lesser General Public License for more details.
-#
-# You should have received a copy of the GNU Lesser General Public
-# License along with this program; if not, write to the Free Software
-# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
-##############################################################################
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
#
from spack import *
class RBiobase(RPackage):
"""Functions that are needed by many other packages
- or which replace R functions."""
+ or which replace R functions."""
homepage = "https://www.bioconductor.org/packages/Biobase/"
- url = "https://git.bioconductor.org/packages/Biobase"
- list_url = homepage
+ git = "https://git.bioconductor.org/packages/Biobase.git"
- version('2.36.2', git='https://git.bioconductor.org/packages/Biobase', commit='15f50912f3fa08ccb15c33b7baebe6b8a59ce075')
+ version('2.40.0', commit='6555edbbcb8a04185ef402bfdea7ed8ac72513a5')
+ version('2.38.0', commit='83f89829e0278ac014b0bc6664e621ac147ba424')
+ version('2.36.2', commit='15f50912f3fa08ccb15c33b7baebe6b8a59ce075')
- depends_on('r-biocgenerics', type=('build', 'run'))
- depends_on('r@3.4.0:3.4.9', when='@2.36.2')
+ depends_on('r-biocgenerics@0.16.1:', type=('build', 'run'))
+ depends_on('r@3.4.0:3.4.9', when='@2.36.2', type=('build', 'run'))
+ depends_on('r@3.5.0:3.5.9', when='@2.40.0', type=('build', 'run'))