diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-biocgenerics/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-biocgenerics/package.py | 26 |
1 files changed, 5 insertions, 21 deletions
diff --git a/var/spack/repos/builtin/packages/r-biocgenerics/package.py b/var/spack/repos/builtin/packages/r-biocgenerics/package.py index ce93356541..654e7f1b2a 100644 --- a/var/spack/repos/builtin/packages/r-biocgenerics/package.py +++ b/var/spack/repos/builtin/packages/r-biocgenerics/package.py @@ -25,32 +25,16 @@ from spack import * -class RBiocgenerics(Package): +class RBiocgenerics(RPackage): """S4 generic functions needed by many Bioconductor packages.""" homepage = 'https://bioconductor.org/packages/BiocGenerics/' - version('bioc-3.3', + version('3.3', git='https://github.com/Bioconductor-mirror/BiocGenerics.git', branch='release-3.3') - version('bioc-3.2', + version('3.2', git='https://github.com/Bioconductor-mirror/BiocGenerics.git', branch='release-3.2') - extends('r') - - def validate(self, spec): - """ - Checks that the version of R is appropriate for the Bioconductor - version. - """ - if spec.satisfies('@bioc-3.3'): - if not spec.satisfies('^R@3.3.0:3.3.9'): - raise InstallError('Must use R-3.3 for Bioconductor-3.3') - elif spec.satisfies('@bioc-3.2'): - if not spec.satisfies('^R@3.2.0:3.2.9'): - raise InstallError('Must use R-3.2 for Bioconductor-3.2') - - def install(self, spec, prefix): - self.validate(spec) - R('CMD', 'INSTALL', '--library=%s' % - self.module.r_lib_dir, '%s' % self.stage.source_path) + depends_on('r@3.3.0:3.3.9', when='@3.3') + depends_on('r@3.2.0:3.2.9', when='@3.2') |