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Diffstat (limited to 'var/spack/repos/builtin/packages/r-biocneighbors/package.py')
-rw-r--r-- | var/spack/repos/builtin/packages/r-biocneighbors/package.py | 35 |
1 files changed, 35 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-biocneighbors/package.py b/var/spack/repos/builtin/packages/r-biocneighbors/package.py new file mode 100644 index 0000000000..82ed74150d --- /dev/null +++ b/var/spack/repos/builtin/packages/r-biocneighbors/package.py @@ -0,0 +1,35 @@ +# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RBiocneighbors(RPackage): + """Nearest Neighbor Detection for Bioconductor Packages. + + Implements exact and approximate methods for nearest neighbor detection, + in a framework that allows them to be easily switched within + Bioconductor packages or workflows. Exact searches can be performed + using the k-means for k-nearest neighbors algorithm or with vantage + point trees. Approximate searches can be performed using the Annoy or + HNSW libraries. Searching on either Euclidean or Manhattan distances is + supported. Parallelization is achieved for all methods by using + BiocParallel. Functions are also provided to search for all neighbors + within a given distance.""" + + homepage = "https://bioconductor.org/packages/BiocNeighbors" + git = "https://git.bioconductor.org/packages/BiocNeighbors.git" + + version('1.2.0', commit='f754c6300f835142536a4594ddf750481e0fe273') + version('1.0.0', commit='e252fc04b6d22097f2c5f74406e77d85e7060770') + + depends_on('r@3.5:', when='@1.0.0', type=('build', 'run')) + depends_on('r-biocparallel', type=('build', 'run')) + depends_on('r-rcpp', type=('build', 'run')) + depends_on('r-s4vectors', type=('build', 'run')) + depends_on('r-rcppannoy', type=('build', 'run')) + + depends_on('r-biocgenerics', when='@1.2.0:', type=('build', 'run')) + depends_on('r-rcpphnsw', when='@1.2.0:', type=('build', 'run')) |