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Diffstat (limited to 'var/spack/repos/builtin/packages/r-biomformat/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-biomformat/package.py | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-biomformat/package.py b/var/spack/repos/builtin/packages/r-biomformat/package.py new file mode 100644 index 0000000000..29c1d4e75c --- /dev/null +++ b/var/spack/repos/builtin/packages/r-biomformat/package.py @@ -0,0 +1,29 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RBiomformat(RPackage): + """This is an R package for interfacing with the BIOM format. This + package includes basic tools for reading biom-format files, accessing + and subsetting data tables from a biom object (which is more complex + than a single table), as well as limited support for writing a + biom-object back to a biom-format file. The design of this API is + intended to match the python API and other tools included with the + biom-format project, but with a decidedly "R flavor" that should be + familiar to R users. This includes S4 classes and methods, as well + as extensions of common core functions/methods.""" + + homepage = "https://www.bioconductor.org/packages/biomformat/" + git = "https://git.bioconductor.org/packages/biomformat.git" + + version('1.4.0', commit='83b4b1883bc56ea93a0a6ca90fc1b18712ef0f1a') + + depends_on('r-plyr', type=('build', 'run')) + depends_on('r-jsonlite', type=('build', 'run')) + depends_on('r-matrix', type=('build', 'run')) + depends_on('r-rhdf5', type=('build', 'run')) + depends_on('r@3.4.0:3.4.9', when='@1.4.0') |