diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-bsgenome/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-bsgenome/package.py | 35 |
1 files changed, 23 insertions, 12 deletions
diff --git a/var/spack/repos/builtin/packages/r-bsgenome/package.py b/var/spack/repos/builtin/packages/r-bsgenome/package.py index 1578380eb7..afbc8225dd 100644 --- a/var/spack/repos/builtin/packages/r-bsgenome/package.py +++ b/var/spack/repos/builtin/packages/r-bsgenome/package.py @@ -1,4 +1,4 @@ -# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other +# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other # Spack Project Developers. See the top-level COPYRIGHT file for details. # # SPDX-License-Identifier: (Apache-2.0 OR MIT) @@ -7,25 +7,36 @@ from spack import * class RBsgenome(RPackage): - """Infrastructure shared by all the Biostrings-based genome data - packages.""" + """Software infrastructure for efficient representation of full genomes and + their SNPs.""" - homepage = "https://www.bioconductor.org/packages/BSgenome/" + homepage = "https://bioconductor.org/packages/BSgenome" git = "https://git.bioconductor.org/packages/BSgenome.git" + version('1.52.0', commit='5398eba1cb56a873b29c04a7ce6858d5d60ff75b') + version('1.50.0', commit='43910755f7477e4fe9bb968f186fddbb2f7355f9') + version('1.48.0', commit='092a1b90482ace329cbd8ca2a338e91449acb93e') version('1.46.0', commit='bdfbd6d09820993585b8231ddea5e11c99008dc5') version('1.44.2', commit='105b00588a758d5ec7c347a7dff2756aea4516a0') + depends_on('r@2.8.0:', type=('build', 'run')) depends_on('r-biocgenerics@0.13.8:', type=('build', 'run')) depends_on('r-s4vectors@0.9.36:', type=('build', 'run')) - depends_on('r-iranges@2.1.33:', type=('build', 'run'), when='@1.44.2') - depends_on('r-iranges@2.11.16:', type=('build', 'run'), when='@1.46.0') - depends_on('r-genomeinfodb@1.11.4:', type=('build', 'run'), when='@1.44.2') - depends_on('r-genomeinfodb@1.13.1:', type=('build', 'run'), when='@1.46.0') - depends_on('r-genomicranges@1.27.6:', type=('build', 'run'), when='@1.44.2') - depends_on('r-genomicranges@1.29.14:', type=('build', 'run'), when='@1.46.0') + depends_on('r-iranges@2.1.33:', type=('build', 'run')) + depends_on('r-genomeinfodb@1.11.4:', type=('build', 'run')) + depends_on('r-genomicranges@1.27.6:', type=('build', 'run')) depends_on('r-biostrings@2.35.3:', type=('build', 'run')) depends_on('r-rtracklayer@1.25.8:', type=('build', 'run')) - depends_on('r-rsamtools', type=('build', 'run')) depends_on('r-xvector', type=('build', 'run')) - depends_on('r@3.4.0:3.4.9', when='@1.44.2:') + depends_on('r-rsamtools', type=('build', 'run')) + + depends_on('r-iranges@2.11.16:', when='@1.46.0:', type=('build', 'run')) + depends_on('r-genomeinfodb@1.13.1:', when='@1.46.0:', type=('build', 'run')) + depends_on('r-genomicranges@1.29.14:', when='@1.46.0:', type=('build', 'run')) + + depends_on('r-s4vectors@0.17.28:', when='@1.48.0:', type=('build', 'run')) + depends_on('r-iranges@2.13.16:', when='@1.48.0:', type=('build', 'run')) + depends_on('r-genomeinfodb@1.15.2:', when='@1.48.0:', type=('build', 'run')) + depends_on('r-genomicranges@1.31.10:', when='@1.48.0:', type=('build', 'run')) + depends_on('r-biostrings@2.47.6:', when='@1.48.0:', type=('build', 'run')) + depends_on('r-rtracklayer@1.39.7:', when='@1.48.0:', type=('build', 'run')) |