diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-bsgenome/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-bsgenome/package.py | 52 |
1 files changed, 18 insertions, 34 deletions
diff --git a/var/spack/repos/builtin/packages/r-bsgenome/package.py b/var/spack/repos/builtin/packages/r-bsgenome/package.py index 3758992266..3b2de6aeb7 100644 --- a/var/spack/repos/builtin/packages/r-bsgenome/package.py +++ b/var/spack/repos/builtin/packages/r-bsgenome/package.py @@ -1,27 +1,8 @@ -############################################################################## -# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. -# Produced at the Lawrence Livermore National Laboratory. +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. # -# This file is part of Spack. -# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. -# LLNL-CODE-647188 -# -# For details, see https://github.com/spack/spack -# Please also see the NOTICE and LICENSE files for our notice and the LGPL. -# -# This program is free software; you can redistribute it and/or modify -# it under the terms of the GNU Lesser General Public License (as -# published by the Free Software Foundation) version 2.1, February 1999. -# -# This program is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and -# conditions of the GNU Lesser General Public License for more details. -# -# You should have received a copy of the GNU Lesser General Public -# License along with this program; if not, write to the Free Software -# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA -############################################################################## +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + from spack import * @@ -30,18 +11,21 @@ class RBsgenome(RPackage): packages.""" homepage = "https://www.bioconductor.org/packages/BSgenome/" - url = "https://git.bioconductor.org/packages/BSgenome" - list_url = homepage + git = "https://git.bioconductor.org/packages/BSgenome.git" - version('1.44.2', git='https://git.bioconductor.org/packages/BSgenome', commit='105b00588a758d5ec7c347a7dff2756aea4516a0') + version('1.46.0', commit='bdfbd6d09820993585b8231ddea5e11c99008dc5') + version('1.44.2', commit='105b00588a758d5ec7c347a7dff2756aea4516a0') - depends_on('r-biocgenerics', type=('build', 'run')) - depends_on('r-s4vectors', type=('build', 'run')) - depends_on('r-iranges', type=('build', 'run')) - depends_on('r-genomeinfodb', type=('build', 'run')) - depends_on('r-genomicranges', type=('build', 'run')) - depends_on('r-biostrings', type=('build', 'run')) - depends_on('r-rtracklayer', type=('build', 'run')) + depends_on('r-biocgenerics@0.13.8:', type=('build', 'run')) + depends_on('r-s4vectors@0.9.36:', type=('build', 'run')) + depends_on('r-iranges@2.1.33:', type=('build', 'run'), when='@1.44.2') + depends_on('r-iranges@2.11.16:', type=('build', 'run'), when='@1.46.0') + depends_on('r-genomeinfodb@1.11.4:', type=('build', 'run'), when='@1.44.2') + depends_on('r-genomeinfodb@1.13.1:', type=('build', 'run'), when='@1.46.0') + depends_on('r-genomicranges@1.27.6:', type=('build', 'run'), when='@1.44.2') + depends_on('r-genomicranges@1.29.14:', type=('build', 'run'), when='@1.46.0') + depends_on('r-biostrings@2.35.3:', type=('build', 'run')) + depends_on('r-rtracklayer@1.25.8:', type=('build', 'run')) depends_on('r-rsamtools', type=('build', 'run')) depends_on('r-xvector', type=('build', 'run')) - depends_on('r@3.4.0:3.4.9', when='@1.44.2') + depends_on('r@3.4.0:3.4.9', when='@1.44.2:') |