diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-bsseq/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-bsseq/package.py | 23 |
1 files changed, 13 insertions, 10 deletions
diff --git a/var/spack/repos/builtin/packages/r-bsseq/package.py b/var/spack/repos/builtin/packages/r-bsseq/package.py index c753c549a0..fe8cebe8fd 100644 --- a/var/spack/repos/builtin/packages/r-bsseq/package.py +++ b/var/spack/repos/builtin/packages/r-bsseq/package.py @@ -1,4 +1,4 @@ -# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other # Spack Project Developers. See the top-level COPYRIGHT file for details. # # SPDX-License-Identifier: (Apache-2.0 OR MIT) @@ -7,49 +7,52 @@ from spack import * class RBsseq(RPackage): - """A collection of tools for analyzing and visualizing bisulfite sequencing + """Analyze, manage and store bisulfite sequencing data + + A collection of tools for analyzing and visualizing bisulfite sequencing data.""" homepage = "https://github.com/kasperdanielhansen/bsseq" git = "https://git.bioconductor.org/packages/bsseq" + version('1.26.0', commit='fae32292687625012a2938a48c93df55ad4257b5') version('1.24.4', commit='8fe7a03') version('1.22.0', commit='d4f7301') version('1.20.0', commit='07e398b') depends_on('r@3.5:', type=('build', 'run')) - + depends_on('r@4.0:', when='@1.26.0:', type=('build', 'run')) depends_on('r-biocgenerics', type=('build', 'run')) - depends_on('r-genomicranges@1.29.14:', type=('build', 'run')) depends_on('r-genomicranges@1.33.6:', when='@1.24.4:', type=('build', 'run')) - + depends_on('r-genomicranges@1.41.5:', when='@1.26.0:', type=('build', 'run')) depends_on('r-summarizedexperiment@1.9.18:', type=('build', 'run')) depends_on('r-summarizedexperiment@1.17.4:', when='@1.24.4:', type=('build', 'run')) - + depends_on('r-summarizedexperiment@1.19.5:', when='@1.26.0:', type=('build', 'run')) depends_on('r-iranges@2.11.16:', type=('build', 'run')) depends_on('r-iranges@2.22.2:', when='@1.24.4:', type=('build', 'run')) - + depends_on('r-iranges@2.23.9:', when='@1.26.0:', type=('build', 'run')) depends_on('r-genomeinfodb', type=('build', 'run')) depends_on('r-scales', type=('build', 'run')) depends_on('r-biobase', type=('build', 'run')) depends_on('r-locfit', type=('build', 'run')) depends_on('r-gtools', type=('build', 'run')) depends_on('r-data-table@1.11.8:', type=('build', 'run')) - depends_on('r-s4vectors', type=('build', 'run')) depends_on('r-s4vectors@0.23.11:', when='@1.22.0:', type=('build', 'run')) - depends_on('r-s4vectors@0.25.14:', when='@1.24.4', type=('build', 'run')) - + depends_on('r-s4vectors@0.25.14:', when='@1.24.4:', type=('build', 'run')) + depends_on('r-s4vectors@0.27.12:', when='@1.26.0:', type=('build', 'run')) depends_on('r-r-utils@2.0.0:', type=('build', 'run')) depends_on('r-delayedmatrixstats@1.5.2:', type=('build', 'run')) depends_on('r-permute', type=('build', 'run')) depends_on('r-limma', type=('build', 'run')) depends_on('r-delayedarray@0.9.8:', type=('build', 'run')) + depends_on('r-delayedarray@0.15.16:', when='@1.26.0:', type=('build', 'run')) depends_on('r-rcpp', type=('build', 'run')) depends_on('r-biocparallel', type=('build', 'run')) depends_on('r-bsgenome', type=('build', 'run')) depends_on('r-biostrings', type=('build', 'run')) depends_on('r-hdf5array@1.11.9:', type=('build', 'run')) + depends_on('r-hdf5array@1.15.19:', when='@1.26.0:', type=('build', 'run')) depends_on('r-rhdf5', type=('build', 'run')) depends_on('r-beachmat', type=('build', 'run')) |