diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-deseq/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-deseq/package.py | 20 |
1 files changed, 13 insertions, 7 deletions
diff --git a/var/spack/repos/builtin/packages/r-deseq/package.py b/var/spack/repos/builtin/packages/r-deseq/package.py index dc60c09f45..d7cdac0f7c 100644 --- a/var/spack/repos/builtin/packages/r-deseq/package.py +++ b/var/spack/repos/builtin/packages/r-deseq/package.py @@ -7,18 +7,24 @@ from spack import * class RDeseq(RPackage): - """Estimate variance-mean dependence in count data from - high-throughput sequencing assays and test for differential - expression based on a model using the negative binomial - distribution.""" + """Differential gene expression analysis based on the negative binomial + distribution. - homepage = "https://www.bioconductor.org/packages/DESeq/" + Estimate variance-mean dependence in count data from high-throughput + sequencing assays and test for differential expression based on a model + using the negative binomial distribution""" + + homepage = "https://bioconductor.org/packages/DESeq" git = "https://git.bioconductor.org/packages/DESeq.git" + version('1.36.0', commit='db4af67b49d3bd8c321d19efbe9415cd2e4ddb7e') + version('1.34.1', commit='e86f1b03a30bc02de4bfd4a0759af2f65cb48c62') + version('1.32.0', commit='e3d623b815b53d79eae7cdd09d097cc6098d28c9') + version('1.30.0', commit='90c93d991dd980d538c13b0361d3345f9546794e') version('1.28.0', commit='738371466e6ccf00179fd35b617c8ba0e1e91630') - depends_on('r-biocgenerics', type=('build', 'run')) - depends_on('r-biobase', type=('build', 'run')) + depends_on('r-biocgenerics@0.7.5:', type=('build', 'run')) + depends_on('r-biobase@2.21.7:', type=('build', 'run')) depends_on('r-locfit', type=('build', 'run')) depends_on('r-lattice', type=('build', 'run')) depends_on('r-genefilter', type=('build', 'run')) |