diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-deseq2/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-deseq2/package.py | 62 |
1 files changed, 31 insertions, 31 deletions
diff --git a/var/spack/repos/builtin/packages/r-deseq2/package.py b/var/spack/repos/builtin/packages/r-deseq2/package.py index b5aebafcc6..073f0f09e9 100644 --- a/var/spack/repos/builtin/packages/r-deseq2/package.py +++ b/var/spack/repos/builtin/packages/r-deseq2/package.py @@ -8,37 +8,37 @@ from spack.package import * class RDeseq2(RPackage): """Differential gene expression analysis based on the negative binomial - distribution. + distribution. - Estimate variance-mean dependence in count data from high-throughput - sequencing assays and test for differential expression based on a model - using the negative binomial distribution.""" + Estimate variance-mean dependence in count data from high-throughput + sequencing assays and test for differential expression based on a model + using the negative binomial distribution.""" homepage = "https://bioconductor.org/packages/DESeq2" - git = "https://git.bioconductor.org/packages/DESeq2.git" - - version('1.36.0', commit='2800b78ae52c0600f7e603c54af59beed3a2ed17') - version('1.34.0', commit='25d4f74be59548122ccfbe8687d30c0bae5cf49a') - version('1.30.0', commit='f4b47b208ee26ab23fe65c345f907fcfe70b3f77') - version('1.24.0', commit='3ce7fbbebac526b726a6f85178063d02eb0314bf') - version('1.22.2', commit='3c6a89b61add635d6d468c7fa00192314f8ca4ce') - version('1.20.0', commit='7e88ea5c5e68473824ce0af6e10f19e22374cb7c') - version('1.18.1', commit='ef65091d46436af68915124b752f5e1cc55e93a7') - version('1.16.1', commit='f41d9df2de25fb57054480e50bc208447a6d82fb') - - depends_on('r-s4vectors@0.9.25:', type=('build', 'run')) - depends_on('r-s4vectors@0.23.18:', type=('build', 'run'), when='@1.30.0:') - depends_on('r-iranges', type=('build', 'run')) - depends_on('r-genomicranges', type=('build', 'run')) - depends_on('r-summarizedexperiment@1.1.6:', type=('build', 'run')) - depends_on('r-biocgenerics@0.7.5:', type=('build', 'run')) - depends_on('r-biobase', type=('build', 'run')) - depends_on('r-biocparallel', type=('build', 'run')) - depends_on('r-genefilter', type=('build', 'run')) - depends_on('r-locfit', type=('build', 'run')) - depends_on('r-geneplotter', type=('build', 'run')) - depends_on('r-ggplot2', type=('build', 'run')) - depends_on('r-rcpp@0.11.0:', type=('build', 'run')) - depends_on('r-rcpparmadillo', type=('build', 'run')) - - depends_on('r-hmisc', type=('build', 'run'), when='@:1.30.0') + git = "https://git.bioconductor.org/packages/DESeq2.git" + + version("1.36.0", commit="2800b78ae52c0600f7e603c54af59beed3a2ed17") + version("1.34.0", commit="25d4f74be59548122ccfbe8687d30c0bae5cf49a") + version("1.30.0", commit="f4b47b208ee26ab23fe65c345f907fcfe70b3f77") + version("1.24.0", commit="3ce7fbbebac526b726a6f85178063d02eb0314bf") + version("1.22.2", commit="3c6a89b61add635d6d468c7fa00192314f8ca4ce") + version("1.20.0", commit="7e88ea5c5e68473824ce0af6e10f19e22374cb7c") + version("1.18.1", commit="ef65091d46436af68915124b752f5e1cc55e93a7") + version("1.16.1", commit="f41d9df2de25fb57054480e50bc208447a6d82fb") + + depends_on("r-s4vectors@0.9.25:", type=("build", "run")) + depends_on("r-s4vectors@0.23.18:", type=("build", "run"), when="@1.30.0:") + depends_on("r-iranges", type=("build", "run")) + depends_on("r-genomicranges", type=("build", "run")) + depends_on("r-summarizedexperiment@1.1.6:", type=("build", "run")) + depends_on("r-biocgenerics@0.7.5:", type=("build", "run")) + depends_on("r-biobase", type=("build", "run")) + depends_on("r-biocparallel", type=("build", "run")) + depends_on("r-genefilter", type=("build", "run")) + depends_on("r-locfit", type=("build", "run")) + depends_on("r-geneplotter", type=("build", "run")) + depends_on("r-ggplot2", type=("build", "run")) + depends_on("r-rcpp@0.11.0:", type=("build", "run")) + depends_on("r-rcpparmadillo", type=("build", "run")) + + depends_on("r-hmisc", type=("build", "run"), when="@:1.30.0") |