diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-dose/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-dose/package.py | 48 |
1 files changed, 29 insertions, 19 deletions
diff --git a/var/spack/repos/builtin/packages/r-dose/package.py b/var/spack/repos/builtin/packages/r-dose/package.py index 8313f4997e..a363d126a5 100644 --- a/var/spack/repos/builtin/packages/r-dose/package.py +++ b/var/spack/repos/builtin/packages/r-dose/package.py @@ -7,27 +7,37 @@ from spack import * class RDose(RPackage): - """This package implements five methods proposed by Resnik, Schlicker, - Jiang, Lin and Wang respectively for measuring semantic similarities - among DO terms and gene products. Enrichment analyses including - hypergeometric model and gene set enrichment analysis are also - implemented for discovering disease associations of high-throughput - biological data.""" - - homepage = "https://www.bioconductor.org/packages/DOSE/" + """Disease Ontology Semantic and Enrichment analysis. + + This package implements five methods proposed by Resnik, Schlicker, + Jiang, Lin and Wang respectively for measuring semantic similarities + among DO terms and gene products. Enrichment analyses including + hypergeometric model and gene set enrichment analysis are also + implemented for discovering disease associations of high-throughput + biological data.""" + + homepage = "https://bioconductor.org/packages/DOSE" git = "https://git.bioconductor.org/packages/DOSE.git" + version('3.10.2', commit='5ea51a2e2a04b4f3cc974cecb4537e14efd6a7e3') + version('3.8.2', commit='4d3d1ca710aa7e4288a412c8d52b054b86a57639') + version('3.6.1', commit='f2967f0482cea39222bfd15767d0f4a5994f241b') + version('3.4.0', commit='dabb70de1a0f91d1767601e871f2f1c16d29a612') version('3.2.0', commit='71f563fc39d02dfdf65184c94e0890a63b96b86b') - depends_on('r@3.4.0:3.4.9', when='@3.2.0') - depends_on('r-scales', type=('build', 'run')) - depends_on('r-s4vectors', type=('build', 'run')) - depends_on('r-reshape2', type=('build', 'run')) - depends_on('r-qvalue', type=('build', 'run')) - depends_on('r-igraph', type=('build', 'run')) - depends_on('r-gosemsim', type=('build', 'run')) - depends_on('r-ggplot2', type=('build', 'run')) - depends_on('r-fgsea', type=('build', 'run')) - depends_on('r-do-db', type=('build', 'run')) - depends_on('r-biocparallel', type=('build', 'run')) + depends_on('r@3.3.1:', type=('build', 'run')) depends_on('r-annotationdbi', type=('build', 'run')) + depends_on('r-biocparallel', type=('build', 'run')) + depends_on('r-do-db', type=('build', 'run')) + depends_on('r-fgsea', type=('build', 'run')) + depends_on('r-ggplot2', type=('build', 'run')) + depends_on('r-gosemsim@2.0.0:', type=('build', 'run')) + depends_on('r-igraph', when='@3.2.0:3.4.0', type=('build', 'run')) + depends_on('r-qvalue', type=('build', 'run')) + depends_on('r-reshape2', type=('build', 'run')) + depends_on('r-s4vectors', type=('build', 'run')) + depends_on('r-scales', when='@3.2.0:3.4.0', type=('build', 'run')) + + depends_on('r-rvcheck', when='@3.4.0', type=('build', 'run')) + + depends_on('r@3.4.0:', when='@3.6.1:', type=('build', 'run')) |