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Diffstat (limited to 'var/spack/repos/builtin/packages/r-dose/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-dose/package.py | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-dose/package.py b/var/spack/repos/builtin/packages/r-dose/package.py new file mode 100644 index 0000000000..96bbf34451 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-dose/package.py @@ -0,0 +1,33 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RDose(RPackage): + """This package implements five methods proposed by Resnik, Schlicker, + Jiang, Lin and Wang respectively for measuring semantic similarities + among DO terms and gene products. Enrichment analyses including + hypergeometric model and gene set enrichment analysis are also + implemented for discovering disease associations of high-throughput + biological data.""" + + homepage = "https://www.bioconductor.org/packages/DOSE/" + git = "https://git.bioconductor.org/packages/DOSE.git" + + version('3.2.0', commit='71f563fc39d02dfdf65184c94e0890a63b96b86b') + + depends_on('r@3.4.0:3.4.9', when='@3.2.0') + depends_on('r-scales', type=('build', 'run')) + depends_on('r-s4vectors', type=('build', 'run')) + depends_on('r-reshape2', type=('build', 'run')) + depends_on('r-qvalue', type=('build', 'run')) + depends_on('r-igraph', type=('build', 'run')) + depends_on('r-gosemsim', type=('build', 'run')) + depends_on('r-ggplot2', type=('build', 'run')) + depends_on('r-fgsea', type=('build', 'run')) + depends_on('r-do-db', type=('build', 'run')) + depends_on('r-biocparallel', type=('build', 'run')) + depends_on('r-annotationdbi', type=('build', 'run')) |