diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-edger/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-edger/package.py | 44 |
1 files changed, 22 insertions, 22 deletions
diff --git a/var/spack/repos/builtin/packages/r-edger/package.py b/var/spack/repos/builtin/packages/r-edger/package.py index 8556b1c129..ab3610f473 100644 --- a/var/spack/repos/builtin/packages/r-edger/package.py +++ b/var/spack/repos/builtin/packages/r-edger/package.py @@ -9,29 +9,29 @@ from spack.package import * class REdger(RPackage): """Empirical Analysis of Digital Gene Expression Data in R. - Differential expression analysis of RNA-seq expression profiles with - biological replication. Implements a range of statistical methodology - based on the negative binomial distributions, including empirical Bayes - estimation, exact tests, generalized linear models and quasi-likelihood - tests. As well as RNA-seq, it be applied to differential signal analysis - of other types of genomic data that produce counts, including ChIP-seq, - Bisulfite-seq, SAGE and CAGE.""" + Differential expression analysis of RNA-seq expression profiles with + biological replication. Implements a range of statistical methodology + based on the negative binomial distributions, including empirical Bayes + estimation, exact tests, generalized linear models and quasi-likelihood + tests. As well as RNA-seq, it be applied to differential signal analysis + of other types of genomic data that produce counts, including ChIP-seq, + Bisulfite-seq, SAGE and CAGE.""" bioc = "edgeR" - version('3.38.1', commit='e58bf52f34ec451096f593126922ad7e5d517f7e') - version('3.36.0', commit='c7db03addfc42138a1901834409c02da9d873026') - version('3.32.1', commit='b881d801d60e5b38413d27f149384c218621c55a') - version('3.26.8', commit='836809e043535f2264e5db8b5c0eabcffe85613f') - version('3.24.3', commit='d1260a2aeba67b9ab7a9b8b197b746814ad0716d') - version('3.22.5', commit='44461aa0412ef4a0d955730f365e44fc64fe1902') - version('3.20.9', commit='acbcbbee939f399673678653678cd9cb4917c4dc') - version('3.18.1', commit='101106f3fdd9e2c45d4a670c88f64c12e97a0495') + version("3.38.1", commit="e58bf52f34ec451096f593126922ad7e5d517f7e") + version("3.36.0", commit="c7db03addfc42138a1901834409c02da9d873026") + version("3.32.1", commit="b881d801d60e5b38413d27f149384c218621c55a") + version("3.26.8", commit="836809e043535f2264e5db8b5c0eabcffe85613f") + version("3.24.3", commit="d1260a2aeba67b9ab7a9b8b197b746814ad0716d") + version("3.22.5", commit="44461aa0412ef4a0d955730f365e44fc64fe1902") + version("3.20.9", commit="acbcbbee939f399673678653678cd9cb4917c4dc") + version("3.18.1", commit="101106f3fdd9e2c45d4a670c88f64c12e97a0495") - depends_on('r@2.15.0:', type=('build', 'run')) - depends_on('r@3.6.0:', type=('build', 'run'), when='@3.26.8:') - depends_on('r-limma', type=('build', 'run')) - depends_on('r-limma@3.34.5:', type=('build', 'run'), when='@3.20.9:') - depends_on('r-limma@3.41.5:', type=('build', 'run'), when='@3.32.1:') - depends_on('r-locfit', type=('build', 'run')) - depends_on('r-rcpp', type=('build', 'run'), when='@3.20.9:') + depends_on("r@2.15.0:", type=("build", "run")) + depends_on("r@3.6.0:", type=("build", "run"), when="@3.26.8:") + depends_on("r-limma", type=("build", "run")) + depends_on("r-limma@3.34.5:", type=("build", "run"), when="@3.20.9:") + depends_on("r-limma@3.41.5:", type=("build", "run"), when="@3.32.1:") + depends_on("r-locfit", type=("build", "run")) + depends_on("r-rcpp", type=("build", "run"), when="@3.20.9:") |