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Diffstat (limited to 'var/spack/repos/builtin/packages/r-fgsea/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-fgsea/package.py | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-fgsea/package.py b/var/spack/repos/builtin/packages/r-fgsea/package.py new file mode 100644 index 0000000000..938a15bf6f --- /dev/null +++ b/var/spack/repos/builtin/packages/r-fgsea/package.py @@ -0,0 +1,26 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RFgsea(RPackage): + """The package implements an algorithm for fast gene set enrichment + analysis. Using the fast algorithm allows to make more permutations + and get more fine grained p-values, which allows to use accurate + stantard approaches to multiple hypothesis correction.""" + + homepage = "https://www.bioconductor.org/packages/fgsea/" + git = "https://git.bioconductor.org/packages/fgsea.git" + + version('1.2.1', commit='99b04eef664204d0dca4b9f8027cd7eefb006b72') + + depends_on('r@3.4.0:3.4.9', when='@1.2.1') + depends_on('r-fastmatch', type=('build', 'run')) + depends_on('r-gridextra', type=('build', 'run')) + depends_on('r-ggplot2', type=('build', 'run')) + depends_on('r-biocparallel', type=('build', 'run')) + depends_on('r-data-table', type=('build', 'run')) + depends_on('r-rcpp', type=('build', 'run')) |