diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-genomicalignments/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-genomicalignments/package.py | 47 |
1 files changed, 28 insertions, 19 deletions
diff --git a/var/spack/repos/builtin/packages/r-genomicalignments/package.py b/var/spack/repos/builtin/packages/r-genomicalignments/package.py index 3ffe5c5cf7..6d35d306d5 100644 --- a/var/spack/repos/builtin/packages/r-genomicalignments/package.py +++ b/var/spack/repos/builtin/packages/r-genomicalignments/package.py @@ -7,35 +7,44 @@ from spack import * class RGenomicalignments(RPackage): - """Provides efficient containers for storing and manipulating short genomic - alignments (typically obtained by aligning short reads to a reference - genome). This includes read counting, computing the coverage, junction - detection, and working with the nucleotide content of the alignments.""" + """Representation and manipulation of short genomic alignments. - homepage = "https://bioconductor.org/packages/GenomicAlignments/" + Provides efficient containers for storing and manipulating short genomic + alignments (typically obtained by aligning short reads to a reference + genome). This includes read counting, computing the coverage, junction + detection, and working with the nucleotide content of the alignments.""" + + homepage = "https://bioconductor.org/packages/GenomicAlignments" git = "https://git.bioconductor.org/packages/GenomicAlignments.git" + version('1.20.1', commit='9dce402071e4cd945de7ff82ea574c79993625fd') + version('1.18.1', commit='8ac41e5981cf343076044f451a984afb651688ab') version('1.16.0', commit='db032a459e5cf05a2a5c2059662a541827112974') version('1.14.2', commit='57b0b35d8b36069d4d94af86af051f0129b28eef') version('1.12.2', commit='b5d6f19e4a89b6c1c3e9e58e5ea4eb13870874ef') + depends_on('r@2.10:', type=('build', 'run')) depends_on('r-biocgenerics@0.15.3:', type=('build', 'run')) depends_on('r-s4vectors@0.13.13:', type=('build', 'run')) - depends_on('r-s4vectors@0.17.28:', when='@1.16.0', type=('build', 'run')) - depends_on('r-iranges@2.5.36:', when='@1.12.2', type=('build', 'run')) - depends_on('r-iranges@2.11.16:', when='@1.14.2', type=('build', 'run')) - depends_on('r-iranges@2.13.25:', when='@1.16.0', type=('build', 'run')) - depends_on('r-genomeinfodb@1.11.5:', when='@1.12.2', type=('build', 'run')) - depends_on('r-genomeinfodb@1.13.1:', when='@1.14.2:', type=('build', 'run')) - depends_on('r-genomicranges@1.27.19:', when='@1.12.2', type=('build', 'run')) - depends_on('r-genomicranges@1.29.14:', when='@1.14.2', type=('build', 'run')) - depends_on('r-genomicranges@1.31.19:', when='@1.16.0', type=('build', 'run')) + depends_on('r-iranges@2.5.36:', type=('build', 'run')) + depends_on('r-genomeinfodb@1.11.5:', type=('build', 'run')) + depends_on('r-genomicranges@1.27.19:', type=('build', 'run')) depends_on('r-summarizedexperiment@1.5.3:', type=('build', 'run')) - depends_on('r-summarizedexperiment@1.9.13:', when='@1.16.0', type=('build', 'run')) depends_on('r-biostrings@2.37.1:', type=('build', 'run')) - depends_on('r-biostrings@2.47.6:', when='@1.16.0', type=('build', 'run')) depends_on('r-rsamtools@1.21.4:', type=('build', 'run')) - depends_on('r-rsamtools@1.31.2:', when='@1.16.0', type=('build', 'run')) depends_on('r-biocparallel', type=('build', 'run')) - depends_on('r@3.4.0:3.4.9', when='@1.12.2:1.15.9', type=('build', 'run')) - depends_on('r@3.5.0:3.5.9', when='@1.16.0', type=('build', 'run')) + + depends_on('r-iranges@2.11.16:', when='@1.14.2:', type=('build', 'run')) + depends_on('r-genomeinfodb@1.13.1:', when='@1.14.2:', type=('build', 'run')) + depends_on('r-genomicranges@1.29.14:', when='@1.14.2:', type=('build', 'run')) + + depends_on('r-s4vectors@0.17.28:', when='@1.16.0:', type=('build', 'run')) + depends_on('r-iranges@2.13.25:', when='@1.16.0:', type=('build', 'run')) + depends_on('r-genomicranges@1.31.19:', when='@1.16.0:', type=('build', 'run')) + depends_on('r-summarizedexperiment@1.9.13:', when='@1.16.0:', type=('build', 'run')) + depends_on('r-biostrings@2.47.6:', when='@1.16.0:', type=('build', 'run')) + depends_on('r-rsamtools@1.31.2:', when='@1.16.0:', type=('build', 'run')) + + depends_on('r-s4vectors@0.19.11:', when='@1.18.1:', type=('build', 'run')) + depends_on('r-iranges@2.15.12:', when='@1.18.1:', type=('build', 'run')) + depends_on('r-genomicranges@1.33.4:', when='@1.18.1:', type=('build', 'run')) |