diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-genomicalignments/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-genomicalignments/package.py | 62 |
1 files changed, 27 insertions, 35 deletions
diff --git a/var/spack/repos/builtin/packages/r-genomicalignments/package.py b/var/spack/repos/builtin/packages/r-genomicalignments/package.py index 4a26b91538..9f66a1aba8 100644 --- a/var/spack/repos/builtin/packages/r-genomicalignments/package.py +++ b/var/spack/repos/builtin/packages/r-genomicalignments/package.py @@ -1,27 +1,8 @@ -############################################################################## -# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. -# Produced at the Lawrence Livermore National Laboratory. +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. # -# This file is part of Spack. -# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. -# LLNL-CODE-647188 -# -# For details, see https://github.com/spack/spack -# Please also see the NOTICE and LICENSE files for our notice and the LGPL. -# -# This program is free software; you can redistribute it and/or modify -# it under the terms of the GNU Lesser General Public License (as -# published by the Free Software Foundation) version 2.1, February 1999. -# -# This program is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and -# conditions of the GNU Lesser General Public License for more details. -# -# You should have received a copy of the GNU Lesser General Public -# License along with this program; if not, write to the Free Software -# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA -############################################################################## +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + from spack import * @@ -32,18 +13,29 @@ class RGenomicalignments(RPackage): detection, and working with the nucleotide content of the alignments.""" homepage = "https://bioconductor.org/packages/GenomicAlignments/" - url = "https://git.bioconductor.org/packages/GenomicAlignments" - list_url = homepage + git = "https://git.bioconductor.org/packages/GenomicAlignments.git" - version('1.12.2', git='https://git.bioconductor.org/packages/GenomicAlignments', commit='b5d6f19e4a89b6c1c3e9e58e5ea4eb13870874ef') + version('1.16.0', commit='db032a459e5cf05a2a5c2059662a541827112974') + version('1.14.2', commit='57b0b35d8b36069d4d94af86af051f0129b28eef') + version('1.12.2', commit='b5d6f19e4a89b6c1c3e9e58e5ea4eb13870874ef') - depends_on('r-biocgenerics', type=('build', 'run')) - depends_on('r-s4vectors', type=('build', 'run')) - depends_on('r-iranges', type=('build', 'run')) - depends_on('r-genomeinfodb', type=('build', 'run')) - depends_on('r-genomicranges', type=('build', 'run')) - depends_on('r-summarizedexperiment', type=('build', 'run')) - depends_on('r-biostrings', type=('build', 'run')) - depends_on('r-rsamtools', type=('build', 'run')) + depends_on('r-biocgenerics@0.15.3:', type=('build', 'run')) + depends_on('r-s4vectors@0.13.13:', type=('build', 'run')) + depends_on('r-s4vectors@0.17.28:', when='@1.16.0', type=('build', 'run')) + depends_on('r-iranges@2.5.36:', when='@1.12.2', type=('build', 'run')) + depends_on('r-iranges@2.11.16:', when='@1.14.2', type=('build', 'run')) + depends_on('r-iranges@2.13.25:', when='@1.16.0', type=('build', 'run')) + depends_on('r-genomeinfodb@1.11.5:', when='@1.12.2', type=('build', 'run')) + depends_on('r-genomeinfodb@1.13.1:', when='@1.14.2:', type=('build', 'run')) + depends_on('r-genomicranges@1.27.19:', when='@1.12.2', type=('build', 'run')) + depends_on('r-genomicranges@1.29.14:', when='@1.14.2', type=('build', 'run')) + depends_on('r-genomicranges@1.31.19:', when='@1.16.0', type=('build', 'run')) + depends_on('r-summarizedexperiment@1.5.3:', type=('build', 'run')) + depends_on('r-summarizedexperiment@1.9.13:', when='@1.16.0', type=('build', 'run')) + depends_on('r-biostrings@2.37.1:', type=('build', 'run')) + depends_on('r-biostrings@2.47.6:', when='@1.16.0', type=('build', 'run')) + depends_on('r-rsamtools@1.21.4:', type=('build', 'run')) + depends_on('r-rsamtools@1.31.2:', when='@1.16.0', type=('build', 'run')) depends_on('r-biocparallel', type=('build', 'run')) - depends_on('r@3.4.0:3.4.9', when='@1.12.2') + depends_on('r@3.4.0:3.4.9', when='@1.12.2:1.15.9', type=('build', 'run')) + depends_on('r@3.5.0:3.5.9', when='@1.16.0', type=('build', 'run')) |