diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-genomicfeatures/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-genomicfeatures/package.py | 48 |
1 files changed, 20 insertions, 28 deletions
diff --git a/var/spack/repos/builtin/packages/r-genomicfeatures/package.py b/var/spack/repos/builtin/packages/r-genomicfeatures/package.py index a9e4bf5143..9531e36ccd 100644 --- a/var/spack/repos/builtin/packages/r-genomicfeatures/package.py +++ b/var/spack/repos/builtin/packages/r-genomicfeatures/package.py @@ -1,27 +1,8 @@ -############################################################################## -# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. -# Produced at the Lawrence Livermore National Laboratory. +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. # -# This file is part of Spack. -# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. -# LLNL-CODE-647188 -# -# For details, see https://github.com/spack/spack -# Please also see the NOTICE and LICENSE files for our notice and the LGPL. -# -# This program is free software; you can redistribute it and/or modify -# it under the terms of the GNU Lesser General Public License (as -# published by the Free Software Foundation) version 2.1, February 1999. -# -# This program is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and -# conditions of the GNU Lesser General Public License for more details. -# -# You should have received a copy of the GNU Lesser General Public -# License along with this program; if not, write to the Free Software -# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA -############################################################################## +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + from spack import * @@ -36,23 +17,34 @@ class RGenomicfeatures(RPackage): desired features in a convenient format.""" homepage = "http://bioconductor.org/packages/GenomicFeatures/" - url = "https://git.bioconductor.org/packages/GenomicFeatures" - list_url = homepage + git = "https://git.bioconductor.org/packages/GenomicFeatures.git" - version('1.28.5', git='https://git.bioconductor.org/packages/GenomicFeatures', commit='ba92381ae93cb1392dad5e6acfab8f6c1d744834') + version('1.32.2', commit='8487aedc8be85a99f0c3fc90cd62430b3fec3a03') + version('1.28.5', commit='ba92381ae93cb1392dad5e6acfab8f6c1d744834') depends_on('r-biocgenerics', type=('build', 'run')) depends_on('r-s4vectors', type=('build', 'run')) + depends_on('r-s4vectors@0.17.29:', when='@1.32.2', type=('build', 'run')) depends_on('r-iranges', type=('build', 'run')) + depends_on('r-iranges@2.13.23:', when='@1.32.2', type=('build', 'run')) depends_on('r-genomeinfodb', type=('build', 'run')) + depends_on('r-genomeinfodb@1.15.4:', when='@1.32.2', type=('build', 'run')) depends_on('r-genomicranges', type=('build', 'run')) + depends_on('r-genomicranges@1.31.17:', when='@1.32.2', type=('build', 'run')) depends_on('r-annotationdbi', type=('build', 'run')) + depends_on('r-annotationdbi@1.41.4:', when='@1.32.2', type=('build', 'run')) depends_on('r-dbi', type=('build', 'run')) - depends_on('r-rsqlite', type=('build', 'run')) + depends_on('r-rsqlite@2.0:', when='@1.28.5:', type=('build', 'run')) depends_on('r-rcurl', type=('build', 'run')) depends_on('r-xvector', type=('build', 'run')) + depends_on('r-xvector@0.19.7:', when='@1.32.2', type=('build', 'run')) depends_on('r-biostrings', type=('build', 'run')) + depends_on('r-biostrings@2.47.6:', when='@1.32.2', type=('build', 'run')) depends_on('r-rtracklayer', type=('build', 'run')) + depends_on('r-rtracklayer@1.39.7:', when='@1.32.2', type=('build', 'run')) depends_on('r-biomart', type=('build', 'run')) + depends_on('r-biomart@2.17.1:', when='@1.32.2', type=('build', 'run')) depends_on('r-biobase', type=('build', 'run')) - depends_on('r@3.4.0:3.4.9', when='@1.28.5') + depends_on('r-biobase@2.15.1:', when='@1.32.2', type=('build', 'run')) + depends_on('r@3.4.0:3.4.9', when='@1.28.5', type=('build', 'run')) + depends_on('r@3.5.0:3.5.9', when='@1.32.2', type=('build', 'run')) |