diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-genomicfeatures/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-genomicfeatures/package.py | 30 |
1 files changed, 15 insertions, 15 deletions
diff --git a/var/spack/repos/builtin/packages/r-genomicfeatures/package.py b/var/spack/repos/builtin/packages/r-genomicfeatures/package.py index b232e467f9..ce4c878c18 100644 --- a/var/spack/repos/builtin/packages/r-genomicfeatures/package.py +++ b/var/spack/repos/builtin/packages/r-genomicfeatures/package.py @@ -1,4 +1,4 @@ -# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other # Spack Project Developers. See the top-level COPYRIGHT file for details. # # SPDX-License-Identifier: (Apache-2.0 OR MIT) @@ -7,7 +7,7 @@ from spack import * class RGenomicfeatures(RPackage): - """Conveniently import and query gene models. + """Conveniently import and query gene models A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the @@ -21,6 +21,7 @@ class RGenomicfeatures(RPackage): homepage = "https://bioconductor.org/packages/GenomicFeatures" git = "https://git.bioconductor.org/packages/GenomicFeatures.git" + version('1.42.1', commit='2e82891974138b0e976799d64a8938f0be61284d') version('1.36.4', commit='28082ec465c91ccaec6881ff348b380edac1b555') version('1.34.8', commit='c798b3bb111f4de30632303540074ec1875c1387') version('1.32.3', commit='80807d88048858846de3750cecb9431a0e5e69e1') @@ -29,29 +30,28 @@ class RGenomicfeatures(RPackage): depends_on('r-biocgenerics@0.1.0:', type=('build', 'run')) depends_on('r-s4vectors@0.9.47:', type=('build', 'run')) + depends_on('r-s4vectors@0.17.29:', when='@1.32.3:', type=('build', 'run')) depends_on('r-iranges@2.9.19:', type=('build', 'run')) + depends_on('r-iranges@2.11.16:', when='@1.30.3:', type=('build', 'run')) + depends_on('r-iranges@2.13.23:', when='@1.32.3:', type=('build', 'run')) depends_on('r-genomeinfodb@1.11.4:', type=('build', 'run')) + depends_on('r-genomeinfodb@1.13.1:', when='@1.30.3:', type=('build', 'run')) + depends_on('r-genomeinfodb@1.15.4:', when='@1.32.3:', type=('build', 'run')) + depends_on('r-genomeinfodb@1.25.7:', when='@1.42.1:', type=('build', 'run')) depends_on('r-genomicranges@1.27.6:', type=('build', 'run')) + depends_on('r-genomicranges@1.29.14:', when='@1.30.3:', type=('build', 'run')) + depends_on('r-genomicranges@1.31.17:', when='@1.32.3:', type=('build', 'run')) depends_on('r-annotationdbi@1.33.15:', type=('build', 'run')) + depends_on('r-annotationdbi@1.41.4:', when='@1.32.3:', type=('build', 'run')) depends_on('r-dbi', type=('build', 'run')) depends_on('r-rsqlite@2.0:', type=('build', 'run')) depends_on('r-rcurl', type=('build', 'run')) depends_on('r-xvector', type=('build', 'run')) + depends_on('r-xvector@0.19.7:', when='@1.32.3:', type=('build', 'run')) depends_on('r-biostrings@2.23.3:', type=('build', 'run')) + depends_on('r-biostrings@2.47.6:', when='@1.32.3:', type=('build', 'run')) depends_on('r-rtracklayer@1.29.24:', type=('build', 'run')) + depends_on('r-rtracklayer@1.39.7:', when='@1.32.3:', type=('build', 'run')) depends_on('r-biomart@2.17.1:', type=('build', 'run')) depends_on('r-biobase@2.15.1:', type=('build', 'run')) - - depends_on('r-iranges@2.11.16:', when='@1.30.3:', type=('build', 'run')) - depends_on('r-genomeinfodb@1.13.1:', when='@1.30.3:', type=('build', 'run')) - depends_on('r-genomicranges@1.29.14:', when='@1.30.3:', type=('build', 'run')) depends_on('r-rmysql', when='@1.30.3', type=('build', 'run')) - - depends_on('r-s4vectors@0.17.29:', when='@1.32.3:', type=('build', 'run')) - depends_on('r-iranges@2.13.23:', when='@1.32.3:', type=('build', 'run')) - depends_on('r-genomeinfodb@1.15.4:', when='@1.32.3:', type=('build', 'run')) - depends_on('r-genomicranges@1.31.17:', when='@1.32.3:', type=('build', 'run')) - depends_on('r-annotationdbi@1.41.4:', when='@1.32.3:', type=('build', 'run')) - depends_on('r-xvector@0.19.7:', when='@1.32.3:', type=('build', 'run')) - depends_on('r-biostrings@2.47.6:', when='@1.32.3:', type=('build', 'run')) - depends_on('r-rtracklayer@1.39.7:', when='@1.32.3:', type=('build', 'run')) |