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Diffstat (limited to 'var/spack/repos/builtin/packages/r-glimma/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-glimma/package.py | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-glimma/package.py b/var/spack/repos/builtin/packages/r-glimma/package.py new file mode 100644 index 0000000000..5fe40e6594 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-glimma/package.py @@ -0,0 +1,24 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RGlimma(RPackage): + """This package generates interactive visualisations for analysis of + RNA-sequencing data using output from limma, edgeR or DESeq2 packages + in an HTML page. The interactions are built on top of the popular + static representations of analysis results in order to provide + additional information.""" + + homepage = "https://bioconductor.org/packages/release/bioc/html/Glimma.html" + git = "https://git.bioconductor.org/packages/Glimma.git" + + version('1.8.2', commit='f4aa1f05c2890d04b01ad4c0ab27f2f729f2c969') + + depends_on('r@3.5.0:3.5.9', when='@1.8.2:', type=('build', 'run')) + depends_on('r-edger', type=('build', 'run')) + depends_on('r-jsonlite', type=('build', 'run')) + depends_on('r-s4vectors', type=('build', 'run')) |