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Diffstat (limited to 'var/spack/repos/builtin/packages/r-gosemsim/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-gosemsim/package.py | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-gosemsim/package.py b/var/spack/repos/builtin/packages/r-gosemsim/package.py new file mode 100644 index 0000000000..b425445b0c --- /dev/null +++ b/var/spack/repos/builtin/packages/r-gosemsim/package.py @@ -0,0 +1,26 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RGosemsim(RPackage): + """The semantic comparisons of Gene Ontology (GO) annotations provide + quantitative ways to compute similarities between genes and gene + groups, and have became important basis for many bioinformatics + analysis approaches. GOSemSim is an R package for semantic similarity + computation among GO terms, sets of GO terms, gene products and gene + clusters. GOSemSim implemented five methods proposed by Resnik, + Schlicker, Jiang, Lin and Wang respectively.""" + + homepage = "https://www.bioconductor.org/packages/GOSemSim/" + git = "https://git.bioconductor.org/packages/GOSemSim.git" + + version('2.2.0', commit='247434790e6c8cf99e5643f569390362b8c87c52') + + depends_on('r@3.4.0:3.4.9', when='@2.2.0') + depends_on('r-annotationdbi', type=('build', 'run')) + depends_on('r-go-db', type=('build', 'run')) + depends_on('r-rcpp', type=('build', 'run')) |