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Diffstat (limited to 'var/spack/repos/builtin/packages/r-goseq/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-goseq/package.py | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-goseq/package.py b/var/spack/repos/builtin/packages/r-goseq/package.py new file mode 100644 index 0000000000..5801169f1f --- /dev/null +++ b/var/spack/repos/builtin/packages/r-goseq/package.py @@ -0,0 +1,24 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RGoseq(RPackage): + """Detects Gene Ontology and/or other user defined categories which are + over/under represented in RNA-seq data""" + + homepage = "https://bioconductor.org/packages/release/bioc/html/goseq.html" + git = "https://git.bioconductor.org/packages/goseq.git" + + version('1.32.0', commit='32fcbe647eea17d7d0d7a262610811502c421d36') + + depends_on('r@3.5.0:3.5.9', when='@1.32.0:', type=('build', 'run')) + depends_on('r-biasedurn', type=('build', 'run')) + depends_on('r-genelendatabase@1.9.2:', type=('build', 'run')) + depends_on('r-mgcv', type=('build', 'run')) + depends_on('r-annotationdbi', type=('build', 'run')) + depends_on('r-go-db', type=('build', 'run')) + depends_on('r-biocgenerics', type=('build', 'run')) |