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Diffstat (limited to 'var/spack/repos/builtin/packages/r-lumi/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-lumi/package.py | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-lumi/package.py b/var/spack/repos/builtin/packages/r-lumi/package.py new file mode 100644 index 0000000000..d79de8d662 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-lumi/package.py @@ -0,0 +1,37 @@ +# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RLumi(RPackage): + """The lumi package provides an integrated solution for the Illumina + microarray data analysis. It includes functions of Illumina BeadStudio + (GenomeStudio) data input, quality control, BeadArray-specific variance + stabilization, normalization and gene annotation at the probe level. It + also includes the functions of processing Illumina methylation microarrays, + especially Illumina Infinium methylation microarrays.""" + + homepage = "https://bioconductor.org/packages/release/bioc/html/lumi.html" + git = "https://git.bioconductor.org/packages/lumi" + + version('2.38.0', commit='321d480d44ce9a0c02ce5af1bddc1f549abdea59') + + depends_on('r@2.10:', type=('build', 'run')) + depends_on('r-biobase@2.5.5:', type=('build', 'run')) + depends_on('r-affy@1.23.4:', type=('build', 'run')) + depends_on('r-methylumi@2.3.2:', type=('build', 'run')) + depends_on('r-genomicfeatures', type=('build', 'run')) + depends_on('r-genomicranges', type=('build', 'run')) + depends_on('r-annotate', type=('build', 'run')) + depends_on('r-lattice', type=('build', 'run')) + depends_on('r-mgcv@1.4-0:', type=('build', 'run')) + depends_on('r-nleqslv', type=('build', 'run')) + depends_on('r-kernsmooth', type=('build', 'run')) + depends_on('r-preprocesscore', type=('build', 'run')) + depends_on('r-rsqlite', type=('build', 'run')) + depends_on('r-dbi', type=('build', 'run')) + depends_on('r-annotationdbi', type=('build', 'run')) + depends_on('r-mass', type=('build', 'run')) |