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Diffstat (limited to 'var/spack/repos/builtin/packages/r-methylumi/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-methylumi/package.py | 41 |
1 files changed, 41 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-methylumi/package.py b/var/spack/repos/builtin/packages/r-methylumi/package.py new file mode 100644 index 0000000000..55f9f42a96 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-methylumi/package.py @@ -0,0 +1,41 @@ +# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RMethylumi(RPackage): + """This package provides classes for holding and manipulating Illumina + methylation data. Based on eSet, it can contain MIAME information, sample + information, feature information, and multiple matrices of data. An + "intelligent" import function, methylumiR can read the Illumina text files + and create a MethyLumiSet. methylumIDAT can directly read raw IDAT files + from HumanMethylation27 and HumanMethylation450 microarrays. Normalization, + background correction, and quality control features for GoldenGate, + Infinium, and Infinium HD arrays are also included.""" + + homepage = "https://bioconductor.org/packages/release/bioc/html/methylumi.html" + git = "https://git.bioconductor.org/packages/methylumi" + + version('2.32.0', commit='e2a29c1b214c0d43c7325d176f9ce41dcf8e2f9d') + + depends_on('r@2.13:', type=('build', 'run')) + depends_on('r-biobase', type=('build', 'run')) + depends_on('r-scales', type=('build', 'run')) + depends_on('r-reshape2', type=('build', 'run')) + depends_on('r-ggplot2', type=('build', 'run')) + depends_on('r-matrixstats', type=('build', 'run')) + depends_on('r-fdb-infiniummethylation-hg19@2.2.0:', type=('build', 'run')) + depends_on('r-minfi', type=('build', 'run')) + depends_on('r-biocgenerics', type=('build', 'run')) + depends_on('r-iranges', type=('build', 'run')) + depends_on('r-genomeinfodb', type=('build', 'run')) + depends_on('r-genomicranges', type=('build', 'run')) + depends_on('r-summarizedexperiment', type=('build', 'run')) + depends_on('r-lattice', type=('build', 'run')) + depends_on('r-annotate', type=('build', 'run')) + depends_on('r-genefilter', type=('build', 'run')) + depends_on('r-annotationdbi', type=('build', 'run')) + depends_on('r-illuminaio', type=('build', 'run')) |