diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-minfi/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-minfi/package.py | 32 |
1 files changed, 24 insertions, 8 deletions
diff --git a/var/spack/repos/builtin/packages/r-minfi/package.py b/var/spack/repos/builtin/packages/r-minfi/package.py index 0f6e1af6f8..1638f1dee2 100644 --- a/var/spack/repos/builtin/packages/r-minfi/package.py +++ b/var/spack/repos/builtin/packages/r-minfi/package.py @@ -7,21 +7,27 @@ from spack import * class RMinfi(RPackage): - """Tools to analyze & visualize Illumina Infinium methylation arrays.""" + """Analyze Illumina Infinium DNA methylation arrays. - homepage = "https://bioconductor.org/packages/minfi/" + Tools to analyze & visualize Illumina Infinium methylation arrays.""" + + homepage = "https://bioconductor.org/packages/minfi" git = "https://git.bioconductor.org/packages/minfi.git" + version('1.30.0', commit='a4c28e9388fe3b35e7d21a9669e39250ed6dcbcd') + version('1.28.4', commit='b5125b2f3e05d37d519eeb6fd44a60efdad388e7') + version('1.26.2', commit='ebb07b728b2453998d46e4e53d4fbf873e8e81fc') + version('1.24.0', commit='a4df428588ea86a1c79ddba76132014f0a39644e') version('1.22.1', commit='b2faf84bcbb291e32d470a0e029450093527545b') - depends_on('r-biocgenerics', type=('build', 'run')) + depends_on('r-biocgenerics@0.15.3:', type=('build', 'run')) depends_on('r-genomicranges', type=('build', 'run')) - depends_on('r-summarizedexperiment', type=('build', 'run')) + depends_on('r-summarizedexperiment@1.1.6:', type=('build', 'run')) depends_on('r-biostrings', type=('build', 'run')) - depends_on('r-bumphunter', type=('build', 'run')) + depends_on('r-bumphunter@1.1.9:', type=('build', 'run')) depends_on('r-s4vectors', type=('build', 'run')) depends_on('r-genomeinfodb', type=('build', 'run')) - depends_on('r-biobase', type=('build', 'run')) + depends_on('r-biobase@2.33.2:', type=('build', 'run')) depends_on('r-iranges', type=('build', 'run')) depends_on('r-beanplot', type=('build', 'run')) depends_on('r-rcolorbrewer', type=('build', 'run')) @@ -31,7 +37,7 @@ class RMinfi(RPackage): depends_on('r-limma', type=('build', 'run')) depends_on('r-preprocesscore', type=('build', 'run')) depends_on('r-illuminaio', type=('build', 'run')) - depends_on('r-matrixstats', type=('build', 'run')) + depends_on('r-matrixstats@0.50.0:', type=('build', 'run')) depends_on('r-mclust', type=('build', 'run')) depends_on('r-genefilter', type=('build', 'run')) depends_on('r-nlme', type=('build', 'run')) @@ -40,4 +46,14 @@ class RMinfi(RPackage): depends_on('r-quadprog', type=('build', 'run')) depends_on('r-data-table', type=('build', 'run')) depends_on('r-geoquery', type=('build', 'run')) - depends_on('r@3.4.0:3.4.9', when='@1.22.1') + + depends_on('r-delayedmatrixstats', when='@1.26.2:', type=('build', 'run')) + depends_on('r-delayedarray@0.5.23:', when='@1.26.2:', type=('build', 'run')) + depends_on('r-hdf5array', when='@1.26.2:', type=('build', 'run')) + depends_on('r-biocparallel', when='@1.26.2:', type=('build', 'run')) + + depends_on('r-illuminaio@0.23.2:', when='@1.28.4:', type=('build', 'run')) + depends_on('r-delayedmatrixstats@1.3.4:', when='@1.28.4:', type=('build', 'run')) + depends_on('r-delayedarray@0.7.38:', when='@1.28.4:', type=('build', 'run')) + + depends_on('r-delayedarray@0.9.8:', when='@1.30.0:', type=('build', 'run')) |