diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-msnbase/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-msnbase/package.py | 39 |
1 files changed, 29 insertions, 10 deletions
diff --git a/var/spack/repos/builtin/packages/r-msnbase/package.py b/var/spack/repos/builtin/packages/r-msnbase/package.py index b617d077ed..faf69a9855 100644 --- a/var/spack/repos/builtin/packages/r-msnbase/package.py +++ b/var/spack/repos/builtin/packages/r-msnbase/package.py @@ -7,19 +7,27 @@ from spack import * class RMsnbase(RPackage): - """Manipulation, processing and visualisation of mass spectrometry and - proteomics data.""" + """Base Functions and Classes for Mass Spectrometry and Proteomics. - homepage = "https://www.bioconductor.org/packages/MSnbase/" + MSnbase provides infrastructure for manipulation, processing and + visualisation of mass spectrometry and proteomics data, ranging from raw + to quantitative and annotated data.""" + + homepage = "https://bioconductor.org/packages/MSnbase" git = "https://git.bioconductor.org/packages/MSnbase.git" + version('2.10.1', commit='4d5899bc9c714f0b1a70cddd537cd4621b2b53b0') + version('2.8.3', commit='ef883752c5e92d445647bc5b5d23d5df320db415') + version('2.6.4', commit='46836860ce0281eef135303f2e2948303d67f68c') + version('2.4.2', commit='c045d65daa730c7837852e6343a05cae9644ab5e') version('2.2.0', commit='d6e8fb7f106d05096fa9074da0f829ac8f02c197') - depends_on('r-biocgenerics', type=('build', 'run')) - depends_on('r-biobase', type=('build', 'run')) - depends_on('r-mzr', type=('build', 'run')) + depends_on('r@3.1:', type=('build', 'run')) + depends_on('r-biocgenerics@0.7.1:', type=('build', 'run')) + depends_on('r-biobase@2.15.2:', type=('build', 'run')) + depends_on('r-mzr@2.7.6:', type=('build', 'run')) depends_on('r-biocparallel', type=('build', 'run')) - depends_on('r-protgenerics', type=('build', 'run')) + depends_on('r-protgenerics@1.5.1:', type=('build', 'run')) depends_on('r-plyr', type=('build', 'run')) depends_on('r-iranges', type=('build', 'run')) depends_on('r-preprocesscore', type=('build', 'run')) @@ -27,12 +35,23 @@ class RMsnbase(RPackage): depends_on('r-affy', type=('build', 'run')) depends_on('r-impute', type=('build', 'run')) depends_on('r-pcamethods', type=('build', 'run')) - depends_on('r-mzid', type=('build', 'run')) - depends_on('r-maldiquant', type=('build', 'run')) + depends_on('r-mzid@1.5.2:', type=('build', 'run')) + depends_on('r-maldiquant@1.16:', type=('build', 'run')) depends_on('r-digest', type=('build', 'run')) depends_on('r-lattice', type=('build', 'run')) depends_on('r-ggplot2', type=('build', 'run')) depends_on('r-s4vectors', type=('build', 'run')) depends_on('r-xml', type=('build', 'run')) depends_on('r-rcpp', type=('build', 'run')) - depends_on('r@3.4.0:3.4.9', when='@2.2.0') + + depends_on('r-mzr@2.11.11:', when='@2.4.2:', type=('build', 'run')) + depends_on('r-protgenerics@1.9.1:', when='@2.4.2:', type=('build', 'run')) + + depends_on('r-mzr@2.13.6:', when='@2.6.4:', type=('build', 'run')) + depends_on('r-iranges@2.13.28:', when='@2.6.4:', type=('build', 'run')) + depends_on('r-scales', when='@2.6.4:', type=('build', 'run')) + depends_on('r-mass', when='@2.6.4:', type=('build', 'run')) + + depends_on('r-mzr@2.15.1:', when='@2.8.3:', type=('build', 'run')) + + depends_on('r-mzr@2.17.3:', when='@2.10.1:', type=('build', 'run')) |