diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-pathview/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-pathview/package.py | 38 |
1 files changed, 22 insertions, 16 deletions
diff --git a/var/spack/repos/builtin/packages/r-pathview/package.py b/var/spack/repos/builtin/packages/r-pathview/package.py index cb753e51d8..67d20ef890 100644 --- a/var/spack/repos/builtin/packages/r-pathview/package.py +++ b/var/spack/repos/builtin/packages/r-pathview/package.py @@ -7,26 +7,32 @@ from spack import * class RPathview(RPackage): - """Pathview is a tool set for pathway based data integration and - visualization. It maps and renders a wide variety of biological data on - relevant pathway graphs. All users need is to supply their data and - specify the target pathway. Pathview automatically downloads the pathway - graph data, parses the data file, maps user data to the pathway, and - render pathway graph with the mapped data. In addition, Pathview also - seamlessly integrates with pathway and gene set (enrichment) analysis - tools for large-scale and fully automated analysis.""" + """a tool set for pathway based data integration and visualization. - homepage = "https://www.bioconductor.org/packages/pathview/" + Pathview is a tool set for pathway based data integration and + visualization. It maps and renders a wide variety of biological data on + relevant pathway graphs. All users need is to supply their data and + specify the target pathway. Pathview automatically downloads the pathway + graph data, parses the data file, maps user data to the pathway, and + render pathway graph with the mapped data. In addition, Pathview also + seamlessly integrates with pathway and gene set (enrichment) analysis + tools for large-scale and fully automated analysis.""" + + homepage = "https://bioconductor.org/packages/pathview" git = "https://git.bioconductor.org/packages/pathview.git" + version('1.24.0', commit='e4401c1425c980ce2e6e478a4602a9f6d36ccd8d') + version('1.22.3', commit='ff86f9e166a5b03bbed1a0ad276778958c3045ce') + version('1.20.0', commit='a195afa6ba6c7917af2c7f77170f0644c46880c7') + version('1.18.2', commit='d2048981696564ec75f661ed665977d3a6e09188') version('1.16.7', commit='fc560ed15ef7393a73d35e714716cc24dc835339') - depends_on('r-keggrest', type=('build', 'run')) + depends_on('r@2.10:', type=('build', 'run')) + depends_on('r-org-hs-eg-db', type=('build', 'run')) + depends_on('r-kegggraph', type=('build', 'run')) + depends_on('r-xml', type=('build', 'run')) + depends_on('r-rgraphviz', type=('build', 'run')) + depends_on('r-graph', type=('build', 'run')) depends_on('r-png', type=('build', 'run')) depends_on('r-annotationdbi', type=('build', 'run')) - depends_on('r-graph', type=('build', 'run')) - depends_on('r-rgraphviz', type=('build', 'run')) - depends_on('r-xml', type=('build', 'run')) - depends_on('r-kegggraph', type=('build', 'run')) - depends_on('r-org-hs-eg-db', type=('build', 'run')) - depends_on('r@3.4.0:3.4.9', when='@1.16.7') + depends_on('r-keggrest', type=('build', 'run')) |