diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-pathview/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-pathview/package.py | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-pathview/package.py b/var/spack/repos/builtin/packages/r-pathview/package.py new file mode 100644 index 0000000000..bedd4571f7 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-pathview/package.py @@ -0,0 +1,32 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RPathview(RPackage): + """Pathview is a tool set for pathway based data integration and + visualization. It maps and renders a wide variety of biological data on + relevant pathway graphs. All users need is to supply their data and + specify the target pathway. Pathview automatically downloads the pathway + graph data, parses the data file, maps user data to the pathway, and + render pathway graph with the mapped data. In addition, Pathview also + seamlessly integrates with pathway and gene set (enrichment) analysis + tools for large-scale and fully automated analysis.""" + + homepage = "https://www.bioconductor.org/packages/pathview/" + git = "https://git.bioconductor.org/packages/pathview.git" + + version('1.16.7', commit='fc560ed15ef7393a73d35e714716cc24dc835339') + + depends_on('r-keggrest', type=('build', 'run')) + depends_on('r-png', type=('build', 'run')) + depends_on('r-annotationdbi', type=('build', 'run')) + depends_on('r-graph', type=('build', 'run')) + depends_on('r-rgraphviz', type=('build', 'run')) + depends_on('r-xml', type=('build', 'run')) + depends_on('r-kegggraph', type=('build', 'run')) + depends_on('r-org-hs-eg-db', type=('build', 'run')) + depends_on('r@3.4.0:3.4.9', when='@1.16.7') |