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Diffstat (limited to 'var/spack/repos/builtin/packages/r-phangorn/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-phangorn/package.py | 27 |
1 files changed, 27 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-phangorn/package.py b/var/spack/repos/builtin/packages/r-phangorn/package.py new file mode 100644 index 0000000000..c20fd50fe4 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-phangorn/package.py @@ -0,0 +1,27 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RPhangorn(RPackage): + """Package contains methods for estimation of phylogenetic trees and + networks using Maximum Likelihood, Maximum Parsimony, distance methods + and Hadamard conjugation. Allows to compare trees, models selection and + offers visualizations for trees and split networks.""" + + homepage = "https://cran.r-project.org/package=phangorn" + url = "https://cran.r-project.org/src/contrib/phangorn_2.3.1.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/phangorn" + + version('2.3.1', '85e7309900d061432508ab6f7e3e627e') + + depends_on('r-ape@5.0:', type=('build', 'run')) + depends_on('r-quadprog', type=('build', 'run')) + depends_on('r-igraph@1.0:', type=('build', 'run')) + depends_on('r-matrix', type=('build', 'run')) + depends_on('r-fastmatch', type=('build', 'run')) + depends_on('r-magrittr', type=('build', 'run')) + depends_on('r-rcpp@0.12.0:', type=('build', 'run')) |