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Diffstat (limited to 'var/spack/repos/builtin/packages/r-phantompeakqualtools/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-phantompeakqualtools/package.py | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-phantompeakqualtools/package.py b/var/spack/repos/builtin/packages/r-phantompeakqualtools/package.py new file mode 100644 index 0000000000..a40df310b9 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-phantompeakqualtools/package.py @@ -0,0 +1,30 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RPhantompeakqualtools(RPackage): + """Computes informative enrichment and quality measures for + ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. This is a modified version + of r-spp to be used in conjunction with the phantompeakqualtools + package.""" + + homepage = "https://github.com/kundajelab/phantompeakqualtools" + url = "https://github.com/kundajelab/phantompeakqualtools/raw/master/spp_1.14.tar.gz" + + version('1.14', '4de207d570999170c1bf45bcba8c6d2d') + + depends_on('boost@1.41.0:') + depends_on('r-catools', type=('build', 'run')) + depends_on('r-snow', type=('build', 'run')) + depends_on('r-snowfall', type=('build', 'run')) + depends_on('r-bitops', type=('build', 'run')) + depends_on('r-rsamtools', type=('build', 'run')) + + conflicts('%gcc@6:') + + def setup_environment(self, spack_env, run_env): + spack_env.set('BOOST_ROOT', self.spec['boost'].prefix) |