diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-popvar/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-popvar/package.py | 20 |
1 files changed, 15 insertions, 5 deletions
diff --git a/var/spack/repos/builtin/packages/r-popvar/package.py b/var/spack/repos/builtin/packages/r-popvar/package.py index 45f14f2b87..7234c19ad7 100644 --- a/var/spack/repos/builtin/packages/r-popvar/package.py +++ b/var/spack/repos/builtin/packages/r-popvar/package.py @@ -7,16 +7,26 @@ from spack import * class RPopvar(RPackage): - """PopVar: Genomic Breeding Tools: Genetic Variance Prediction andCross- - Validation""" + """Genomic Breeding Tools: Genetic Variance Prediction and + Cross-Validation. - homepage = "https://cloud.r-project.org/package=PopVar" - url = "https://cloud.r-project.org/src/contrib/PopVar_1.2.1.tar.gz" - list_url = "https://cloud.r-project.org/src/contrib/Archive/PopVar" + The main attribute of 'PopVar' is the prediction of genetic variance in + bi-parental populations, from which the package derives its name. 'PopVar' + contains a set of functions that use phenotypic and genotypic data from a + set of candidate parents to 1) predict the mean, genetic variance, and + superior progeny value of all, or a defined set of pairwise bi-parental + crosses, and 2) perform cross-validation to estimate genome-wide prediction + accuracy of multiple statistical models. More details are available in + Mohammadi, Tiede, and Smith (2015, <doi:10.2135/cropsci2015.01.0030>). A + dataset 'think_barley.rda' is included for reference and examples.""" + cran = "PopVar" + + version('1.3.0', sha256='3145c41c9aa1588d47aaf76c082e6b1c2fd95cf5014b98bd2867cbf2cec782f9') version('1.2.1', sha256='5e3df79634ab63708a431e4b8e6794675972ac6c58d2bc615726aa0f142f5f25') depends_on('r@3.1.1:', type=('build', 'run')) + depends_on('r@3.5.0:', type=('build', 'run'), when='@1.3.0:') depends_on('r-bglr', type=('build', 'run')) depends_on('r-qtl', type=('build', 'run')) depends_on('r-rrblup', type=('build', 'run')) |