diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-rhtslib/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-rhtslib/package.py | 58 |
1 files changed, 29 insertions, 29 deletions
diff --git a/var/spack/repos/builtin/packages/r-rhtslib/package.py b/var/spack/repos/builtin/packages/r-rhtslib/package.py index dbda5783df..c5d882abfc 100644 --- a/var/spack/repos/builtin/packages/r-rhtslib/package.py +++ b/var/spack/repos/builtin/packages/r-rhtslib/package.py @@ -9,42 +9,42 @@ from spack.package import * class RRhtslib(RPackage): """HTSlib high-throughput sequencing library as an R package. - This package provides version 1.7 of the 'HTSlib' C library for high- - throughput sequence analysis. The package is primarily useful to - developers of other R packages who wish to make use of HTSlib. - Motivation and instructions for use of this package are in the vignette, - vignette(package="Rhtslib", "Rhtslib").""" + This package provides version 1.7 of the 'HTSlib' C library for high- + throughput sequence analysis. The package is primarily useful to + developers of other R packages who wish to make use of HTSlib. + Motivation and instructions for use of this package are in the vignette, + vignette(package="Rhtslib", "Rhtslib").""" bioc = "Rhtslib" - version('1.99.5', commit='a5335e1fea92ea06c33d42c7e290b6d8b4245ad3') - version('1.26.0', commit='f5b20e97b283942877529f750b28398782552655') - version('1.22.0', commit='899b79faa54d42c7c9b9a2bc49972109637d367f') - version('1.18.1', commit='751a2ebaed43b7991204b27bd6c7870645001d82') - version('1.16.3', commit='3ed0b5db2ee3cf0df1c6096fde8855c8485eebd4') - version('1.14.1', commit='4be260720f845a34d0ac838278fce1363f645230') - version('1.12.1', commit='e3487b1355995d09b28fde5d0a7504a3e79a7203') - version('1.10.0', commit='53dcf7dfe35d735283956c77c011a97ca3f4eb26') - version('1.8.0', commit='3b5493473bed42958614091c58c739932ffcfa79') - - depends_on('r-zlibbioc', type=('build', 'run')) - depends_on('bzip2', type=('build', 'link', 'run')) - depends_on('xz', type=('build', 'link', 'run')) - depends_on('curl', type=('build', 'link', 'run')) - depends_on('gmake', type='build') + version("1.99.5", commit="a5335e1fea92ea06c33d42c7e290b6d8b4245ad3") + version("1.26.0", commit="f5b20e97b283942877529f750b28398782552655") + version("1.22.0", commit="899b79faa54d42c7c9b9a2bc49972109637d367f") + version("1.18.1", commit="751a2ebaed43b7991204b27bd6c7870645001d82") + version("1.16.3", commit="3ed0b5db2ee3cf0df1c6096fde8855c8485eebd4") + version("1.14.1", commit="4be260720f845a34d0ac838278fce1363f645230") + version("1.12.1", commit="e3487b1355995d09b28fde5d0a7504a3e79a7203") + version("1.10.0", commit="53dcf7dfe35d735283956c77c011a97ca3f4eb26") + version("1.8.0", commit="3b5493473bed42958614091c58c739932ffcfa79") + + depends_on("r-zlibbioc", type=("build", "run")) + depends_on("bzip2", type=("build", "link", "run")) + depends_on("xz", type=("build", "link", "run")) + depends_on("curl", type=("build", "link", "run")) + depends_on("gmake", type="build") # Some versions of this package will leave the temporary installation # directory in the htslib shared object. R will fix this if patchelf is # available - depends_on('patchelf', type='build', when='@1.12:1.14') + depends_on("patchelf", type="build", when="@1.12:1.14") - patch('use_spack_Makeconf.patch', when='@1.12:') - patch('find_deps-1.12.patch', when='@1.12:1.14') - patch('find_deps-1.16.patch', when='@1.16:') + patch("use_spack_Makeconf.patch", when="@1.12:") + patch("find_deps-1.12.patch", when="@1.12:1.14") + patch("find_deps-1.16.patch", when="@1.16:") - @when('@1.12:') + @when("@1.12:") def setup_build_environment(self, env): - env.set('BZIP2_INCLUDE', self.spec['bzip2'].headers.include_flags) - env.set('XZ_INCLUDE', self.spec['xz'].headers.include_flags) - env.set('BZIP2_LIB', self.spec['bzip2'].libs.search_flags) - env.set('XZ_LIB', self.spec['xz'].libs.search_flags) + env.set("BZIP2_INCLUDE", self.spec["bzip2"].headers.include_flags) + env.set("XZ_INCLUDE", self.spec["xz"].headers.include_flags) + env.set("BZIP2_LIB", self.spec["bzip2"].libs.search_flags) + env.set("XZ_LIB", self.spec["xz"].libs.search_flags) |