diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-rsamtools/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-rsamtools/package.py | 72 |
1 files changed, 36 insertions, 36 deletions
diff --git a/var/spack/repos/builtin/packages/r-rsamtools/package.py b/var/spack/repos/builtin/packages/r-rsamtools/package.py index af672b60f3..e9e6f4de8f 100644 --- a/var/spack/repos/builtin/packages/r-rsamtools/package.py +++ b/var/spack/repos/builtin/packages/r-rsamtools/package.py @@ -8,45 +8,45 @@ from spack.package import * class RRsamtools(RPackage): """Binary alignment (BAM), FASTA, variant call (BCF), and tabix file - import. + import. - This package provides an interface to the 'samtools', 'bcftools', and - 'tabix' utilities for manipulating SAM (Sequence Alignment / Map), - FASTA, binary variant call (BCF) and compressed indexed tab-delimited - (tabix) files.""" + This package provides an interface to the 'samtools', 'bcftools', and + 'tabix' utilities for manipulating SAM (Sequence Alignment / Map), + FASTA, binary variant call (BCF) and compressed indexed tab-delimited + (tabix) files.""" bioc = "Rsamtools" - version('2.12.0', commit='d6a65dd57c5a17e4c441a27492e92072f69b175e') - version('2.10.0', commit='b19738e85a467f9032fc7903be3ba10e655e7061') - version('2.6.0', commit='f2aea061517c5a55e314c039251ece9831c7fad2') - version('2.2.1', commit='f10084658b4c9744961fcacd79c0ae9a7a40cd30') - version('2.0.3', commit='17d254cc026574d20db67474260944bf60befd70') - version('1.34.1', commit='0ec1d45c7a14b51d019c3e20c4aa87c6bd2b0d0c') - version('1.32.3', commit='0aa3f134143b045aa423894de81912becf64e4c2') - version('1.30.0', commit='61b365fe3762e796b3808cec7238944b7f68d7a6') - version('1.28.0', commit='dfa5b6abef68175586f21add7927174786412472') - - depends_on('r@3.5.0:', type=('build', 'run'), when='@2.10.0:') - depends_on('r-genomeinfodb@1.1.3:', type=('build', 'run')) - depends_on('r-genomicranges@1.21.6:', type=('build', 'run')) - depends_on('r-genomicranges@1.31.8:', type=('build', 'run'), when='@1.32.3:') - depends_on('r-biostrings@2.37.1:', type=('build', 'run')) - depends_on('r-biostrings@2.47.6:', type=('build', 'run'), when='@1.32.3:') - depends_on('r-biocgenerics@0.1.3:', type=('build', 'run')) - depends_on('r-biocgenerics@0.25.1:', type=('build', 'run'), when='@1.32.3:') - depends_on('r-s4vectors@0.13.8:', type=('build', 'run')) - depends_on('r-s4vectors@0.17.25:', type=('build', 'run'), when='@1.32.3:') - depends_on('r-iranges@2.3.7:', type=('build', 'run')) - depends_on('r-iranges@2.13.12:', type=('build', 'run'), when='@1.32.3:') - depends_on('r-xvector@0.15.1:', type=('build', 'run')) - depends_on('r-xvector@0.19.7:', type=('build', 'run'), when='@1.32.3:') - depends_on('r-zlibbioc', type=('build', 'run')) - depends_on('r-bitops', type=('build', 'run')) - depends_on('r-biocparallel', type=('build', 'run')) - depends_on('r-rhtslib@1.16.3', type=('build', 'run'), when='@2.0.3') - depends_on('r-rhtslib@1.17.7:', type=('build', 'run'), when='@2.2.1:') - depends_on('gmake', type='build') + version("2.12.0", commit="d6a65dd57c5a17e4c441a27492e92072f69b175e") + version("2.10.0", commit="b19738e85a467f9032fc7903be3ba10e655e7061") + version("2.6.0", commit="f2aea061517c5a55e314c039251ece9831c7fad2") + version("2.2.1", commit="f10084658b4c9744961fcacd79c0ae9a7a40cd30") + version("2.0.3", commit="17d254cc026574d20db67474260944bf60befd70") + version("1.34.1", commit="0ec1d45c7a14b51d019c3e20c4aa87c6bd2b0d0c") + version("1.32.3", commit="0aa3f134143b045aa423894de81912becf64e4c2") + version("1.30.0", commit="61b365fe3762e796b3808cec7238944b7f68d7a6") + version("1.28.0", commit="dfa5b6abef68175586f21add7927174786412472") + + depends_on("r@3.5.0:", type=("build", "run"), when="@2.10.0:") + depends_on("r-genomeinfodb@1.1.3:", type=("build", "run")) + depends_on("r-genomicranges@1.21.6:", type=("build", "run")) + depends_on("r-genomicranges@1.31.8:", type=("build", "run"), when="@1.32.3:") + depends_on("r-biostrings@2.37.1:", type=("build", "run")) + depends_on("r-biostrings@2.47.6:", type=("build", "run"), when="@1.32.3:") + depends_on("r-biocgenerics@0.1.3:", type=("build", "run")) + depends_on("r-biocgenerics@0.25.1:", type=("build", "run"), when="@1.32.3:") + depends_on("r-s4vectors@0.13.8:", type=("build", "run")) + depends_on("r-s4vectors@0.17.25:", type=("build", "run"), when="@1.32.3:") + depends_on("r-iranges@2.3.7:", type=("build", "run")) + depends_on("r-iranges@2.13.12:", type=("build", "run"), when="@1.32.3:") + depends_on("r-xvector@0.15.1:", type=("build", "run")) + depends_on("r-xvector@0.19.7:", type=("build", "run"), when="@1.32.3:") + depends_on("r-zlibbioc", type=("build", "run")) + depends_on("r-bitops", type=("build", "run")) + depends_on("r-biocparallel", type=("build", "run")) + depends_on("r-rhtslib@1.16.3", type=("build", "run"), when="@2.0.3") + depends_on("r-rhtslib@1.17.7:", type=("build", "run"), when="@2.2.1:") + depends_on("gmake", type="build") # this is not a listed dependency but is needed - depends_on('curl') + depends_on("curl") |