diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-rtracklayer/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-rtracklayer/package.py | 46 |
1 files changed, 19 insertions, 27 deletions
diff --git a/var/spack/repos/builtin/packages/r-rtracklayer/package.py b/var/spack/repos/builtin/packages/r-rtracklayer/package.py index 11f604b72f..69a2d37c43 100644 --- a/var/spack/repos/builtin/packages/r-rtracklayer/package.py +++ b/var/spack/repos/builtin/packages/r-rtracklayer/package.py @@ -1,27 +1,8 @@ -############################################################################## -# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. -# Produced at the Lawrence Livermore National Laboratory. +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. # -# This file is part of Spack. -# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. -# LLNL-CODE-647188 -# -# For details, see https://github.com/spack/spack -# Please also see the NOTICE and LICENSE files for our notice and the LGPL. -# -# This program is free software; you can redistribute it and/or modify -# it under the terms of the GNU Lesser General Public License (as -# published by the Free Software Foundation) version 2.1, February 1999. -# -# This program is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and -# conditions of the GNU Lesser General Public License for more details. -# -# You should have received a copy of the GNU Lesser General Public -# License along with this program; if not, write to the Free Software -# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA -############################################################################## +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + from spack import * @@ -34,20 +15,31 @@ class RRtracklayer(RPackage): current viewport.""" homepage = "http://bioconductor.org/packages/rtracklayer/" - url = "https://git.bioconductor.org/packages/rtracklayer" - list_url = homepage + git = "https://git.bioconductor.org/packages/rtracklayer.git" - version('1.36.6', git='https://git.bioconductor.org/packages/rtracklayer', commit='8c0ac7230f94e0c5a981acbb178c8de70e968131') + version('1.40.5', commit='4e5b06daccd0bca1ddcd93052deca896ade58fd6') + version('1.36.6', commit='8c0ac7230f94e0c5a981acbb178c8de70e968131') depends_on('r-xml', type=('build', 'run')) depends_on('r-biocgenerics', type=('build', 'run')) + depends_on('r-biocgenerics@0.25.1:', when='@1.40.5', type=('build', 'run')) depends_on('r-s4vectors', type=('build', 'run')) + depends_on('r-s4vectors@0.17.25:', when='@1.40.5', type=('build', 'run')) depends_on('r-iranges', type=('build', 'run')) + depends_on('r-iranges@2.13.13:', when='@1.40.5', type=('build', 'run')) depends_on('r-xvector', type=('build', 'run')) + depends_on('r-xvector@0.19.7:', when='@1.40.5', type=('build', 'run')) depends_on('r-genomeinfodb', type=('build', 'run')) + depends_on('r-genomeinfodb@1.15.2:', when='@1.40.5', type=('build', 'run')) depends_on('r-biostrings', type=('build', 'run')) + depends_on('r-biostrings@2.47.6:', when='@1.40.5', type=('build', 'run')) depends_on('r-zlibbioc', type=('build', 'run')) depends_on('r-rcurl', type=('build', 'run')) depends_on('r-rsamtools', type=('build', 'run')) + depends_on('r-rsamtools@1.31.2:', when='@1.40.5', type=('build', 'run')) depends_on('r-genomicalignments', type=('build', 'run')) - depends_on('r@3.4.0:3.4.9', when='@1.36.6') + depends_on('r-genomicalignments@1.15.6:', when='@1.40.5', type=('build', 'run')) + depends_on('r-genomicranges@1.21.20:', when='@1.36.3', type=('build', 'run')) + depends_on('r-genomicranges@1.31.8:', when='@1.40.5', type=('build', 'run')) + depends_on('r@3.4.0:3.4.9', when='@1.36.6', type=('build', 'run')) + depends_on('r@3.5.0:3.5.9', when='@1.40.5', type=('build', 'run')) |