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Diffstat (limited to 'var/spack/repos/builtin/packages/r-sctransform/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-sctransform/package.py | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-sctransform/package.py b/var/spack/repos/builtin/packages/r-sctransform/package.py new file mode 100644 index 0000000000..7dd0b4e703 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-sctransform/package.py @@ -0,0 +1,32 @@ +# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RSctransform(RPackage): + """A normalization method for single-cell UMI count data using a variance + stabilizing transformation. The transformation is based on a negative + binomial regression model with regularized parameters. As part of the same + regression framework, this package also provides functions for batch + correction, and data correction. See Hafemeister and Satija 2019 + <doi:10.1101/576827> for more details.""" + + homepage = "https://github.com/ChristophH/sctransform" + url = "https://cloud.r-project.org/src/contrib/sctransform_0.2.0.tar.gz" + list_url = "https://cloud.r-project.org/src/contrib/Archive/sctransform" + + version('0.2.0', sha256='d7f4c7958693823454f1426b23b0e1e9c207ad61a7a228602a1885a1318eb3e4') + + depends_on('r@3.0.2:', type=('build', 'run')) + depends_on('r-mass', type=('build', 'run')) + depends_on('r-matrix', type=('build', 'run')) + depends_on('r-future', type=('build', 'run')) + depends_on('r-future-apply', type=('build', 'run')) + depends_on('r-ggplot2', type=('build', 'run')) + depends_on('r-reshape2', type=('build', 'run')) + depends_on('r-gridextra', type=('build', 'run')) + depends_on('r-rcpp@0.11.0:', type=('build', 'run')) + depends_on('r-rcppeigen', type=('build', 'run')) |