diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-sctransform/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-sctransform/package.py | 14 |
1 files changed, 10 insertions, 4 deletions
diff --git a/var/spack/repos/builtin/packages/r-sctransform/package.py b/var/spack/repos/builtin/packages/r-sctransform/package.py index 65d733fe25..eb1db61341 100644 --- a/var/spack/repos/builtin/packages/r-sctransform/package.py +++ b/var/spack/repos/builtin/packages/r-sctransform/package.py @@ -1,4 +1,4 @@ -# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other # Spack Project Developers. See the top-level COPYRIGHT file for details. # # SPDX-License-Identifier: (Apache-2.0 OR MIT) @@ -7,7 +7,9 @@ from spack import * class RSctransform(RPackage): - """A normalization method for single-cell UMI count data using a variance + """Variance Stabilizing Transformations for Single Cell UMI Data + + A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch @@ -18,15 +20,19 @@ class RSctransform(RPackage): url = "https://cloud.r-project.org/src/contrib/sctransform_0.2.0.tar.gz" list_url = "https://cloud.r-project.org/src/contrib/Archive/sctransform" + version('0.3.2', sha256='5dbb0a045e514c19f51bbe11c2dba0b72dca1942d6eb044c36b0538b443475dc') version('0.2.0', sha256='d7f4c7958693823454f1426b23b0e1e9c207ad61a7a228602a1885a1318eb3e4') depends_on('r@3.0.2:', type=('build', 'run')) + depends_on('r@3.1.0:', when='@0.3.2:', type=('build', 'run')) depends_on('r-mass', type=('build', 'run')) depends_on('r-matrix', type=('build', 'run')) - depends_on('r-future', type=('build', 'run')) depends_on('r-future-apply', type=('build', 'run')) + depends_on('r-future', type=('build', 'run')) depends_on('r-ggplot2', type=('build', 'run')) depends_on('r-reshape2', type=('build', 'run')) depends_on('r-gridextra', type=('build', 'run')) + depends_on('r-matrixstats', when='@0.3.2:', type=('build', 'run')) + depends_on('r-rcpparmadillo', when='@0.3.2:', type=('build', 'run')) depends_on('r-rcpp@0.11.0:', type=('build', 'run')) - depends_on('r-rcppeigen', type=('build', 'run')) + depends_on('r-rcppeigen', when='@:0.2.0', type=('build', 'run')) |