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-rw-r--r--var/spack/repos/builtin/packages/r-simpleaffy/package.py24
1 files changed, 15 insertions, 9 deletions
diff --git a/var/spack/repos/builtin/packages/r-simpleaffy/package.py b/var/spack/repos/builtin/packages/r-simpleaffy/package.py
index a5798e0575..070bf60d69 100644
--- a/var/spack/repos/builtin/packages/r-simpleaffy/package.py
+++ b/var/spack/repos/builtin/packages/r-simpleaffy/package.py
@@ -7,20 +7,26 @@ from spack import *
class RSimpleaffy(RPackage):
- """Provides high level functions for reading Affy .CEL files,
- phenotypic data, and then computing simple things with it, such as
- t-tests, fold changes and the like. Makes heavy use of the affy
- library. Also has some basic scatter plot functions and mechanisms
- for generating high resolution journal figures..."""
+ """Very simple high level analysis of Affymetrix data.
- homepage = "http://bioconductor.org/packages/simpleaffy/"
+ Provides high level functions for reading Affy .CEL files, phenotypic
+ data, and then computing simple things with it, such as t-tests, fold
+ changes and the like. Makes heavy use of the affy library. Also has some
+ basic scatter plot functions and mechanisms for generating high
+ resolution journal figures..."""
+
+ homepage = "https://bioconductor.org/packages/simpleaffy"
git = "https://git.bioconductor.org/packages/simpleaffy.git"
+ version('2.60.0', commit='b32b5e7d5c65e43c10f98ab8684a1086a06d04f9')
+ version('2.58.0', commit='70cf1199bad620f60eaa288279632110bb571200')
+ version('2.56.0', commit='a05d768180b8713ad9e1dc46d491b7ef389b299d')
+ version('2.54.0', commit='6876e028d412b14504ad3915cbec1a189e9c6478')
version('2.52.0', commit='f2b43fb9b8e6fa4c03fe28b4efb3144a0a42a385')
- depends_on('r-biocgenerics', type=('build', 'run'))
+ depends_on('r@2.0.0:', type=('build', 'run'))
+ depends_on('r-biocgenerics@0.1.12:', type=('build', 'run'))
depends_on('r-biobase', type=('build', 'run'))
- depends_on('r-affy', type=('build', 'run'))
+ depends_on('r-affy@1.33.6:', type=('build', 'run'))
depends_on('r-genefilter', type=('build', 'run'))
depends_on('r-gcrma', type=('build', 'run'))
- depends_on('r@3.4.0:3.4.9', when='@2.52.0')