diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-snprelate/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-snprelate/package.py | 54 |
1 files changed, 27 insertions, 27 deletions
diff --git a/var/spack/repos/builtin/packages/r-snprelate/package.py b/var/spack/repos/builtin/packages/r-snprelate/package.py index 48aac0b886..13fbb24aa3 100644 --- a/var/spack/repos/builtin/packages/r-snprelate/package.py +++ b/var/spack/repos/builtin/packages/r-snprelate/package.py @@ -8,35 +8,35 @@ from spack.package import * class RSnprelate(RPackage): """Parallel Computing Toolset for Relatedness and Principal Component - Analysis of SNP Data. + Analysis of SNP Data. - Genome-wide association studies (GWAS) are widely used to investigate - the genetic basis of diseases and traits, but they pose many - computational challenges. We developed an R package SNPRelate to provide - a binary format for single-nucleotide polymorphism (SNP) data in GWAS - utilizing CoreArray Genomic Data Structure (GDS) data files. The GDS - format offers the efficient operations specifically designed for - integers with two bits, since a SNP could occupy only two bits. - SNPRelate is also designed to accelerate two key computations on SNP - data using parallel computing for multi-core symmetric multiprocessing - computer architectures: Principal Component Analysis (PCA) and - relatedness analysis using Identity-By-Descent measures. The SNP GDS - format is also used by the GWASTools package with the support of S4 - classes and generic functions. The extended GDS format is implemented in - the SeqArray package to support the storage of single nucleotide - variations (SNVs), insertion/deletion polymorphism (indel) and - structural variation calls.""" + Genome-wide association studies (GWAS) are widely used to investigate + the genetic basis of diseases and traits, but they pose many + computational challenges. We developed an R package SNPRelate to provide + a binary format for single-nucleotide polymorphism (SNP) data in GWAS + utilizing CoreArray Genomic Data Structure (GDS) data files. The GDS + format offers the efficient operations specifically designed for + integers with two bits, since a SNP could occupy only two bits. + SNPRelate is also designed to accelerate two key computations on SNP + data using parallel computing for multi-core symmetric multiprocessing + computer architectures: Principal Component Analysis (PCA) and + relatedness analysis using Identity-By-Descent measures. The SNP GDS + format is also used by the GWASTools package with the support of S4 + classes and generic functions. The extended GDS format is implemented in + the SeqArray package to support the storage of single nucleotide + variations (SNVs), insertion/deletion polymorphism (indel) and + structural variation calls.""" bioc = "SNPRelate" - version('1.30.1', commit='baef8a71d3908287a2307768348c02db0720d125') - version('1.28.0', commit='8fcd837f4627a3bb77cb8d992b2baedd0589d123') - version('1.24.0', commit='419b13b761ea39a8b1b9bc73097fb0359c59f1c2') - version('1.18.1', commit='81c581bf76392efdc8ba237ca2e42ca1dba788ca') - version('1.16.0', commit='0e38e8df4af87dff6c27a23af2867661998c0d85') - version('1.14.0', commit='9501cbfc411aa320e58654a865fda2e9077977af') - version('1.12.2', commit='dce2e2b6f36483a9f905bb5df6ae834a9f1136fe') - version('1.10.2', commit='3f5c4010871df742e7a460586b38ad0c2fd37aeb') + version("1.30.1", commit="baef8a71d3908287a2307768348c02db0720d125") + version("1.28.0", commit="8fcd837f4627a3bb77cb8d992b2baedd0589d123") + version("1.24.0", commit="419b13b761ea39a8b1b9bc73097fb0359c59f1c2") + version("1.18.1", commit="81c581bf76392efdc8ba237ca2e42ca1dba788ca") + version("1.16.0", commit="0e38e8df4af87dff6c27a23af2867661998c0d85") + version("1.14.0", commit="9501cbfc411aa320e58654a865fda2e9077977af") + version("1.12.2", commit="dce2e2b6f36483a9f905bb5df6ae834a9f1136fe") + version("1.10.2", commit="3f5c4010871df742e7a460586b38ad0c2fd37aeb") - depends_on('r@2.15:', type=('build', 'run')) - depends_on('r-gdsfmt@1.8.3:', type=('build', 'run')) + depends_on("r@2.15:", type=("build", "run")) + depends_on("r-gdsfmt@1.8.3:", type=("build", "run")) |