diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-tfbstools/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-tfbstools/package.py | 70 |
1 files changed, 35 insertions, 35 deletions
diff --git a/var/spack/repos/builtin/packages/r-tfbstools/package.py b/var/spack/repos/builtin/packages/r-tfbstools/package.py index 583d1db7e4..e4a9f9c3f8 100644 --- a/var/spack/repos/builtin/packages/r-tfbstools/package.py +++ b/var/spack/repos/builtin/packages/r-tfbstools/package.py @@ -9,42 +9,42 @@ from spack.package import * class RTfbstools(RPackage): """Software Package for Transcription Factor Binding Site (TFBS) Analysis. - TFBSTools is a package for the analysis and manipulation of - transcription factor binding sites. It includes matrices conversion - between Position Frequency Matirx (PFM), Position Weight Matirx (PWM) - and Information Content Matrix (ICM). It can also scan putative TFBS - from sequence/alignment, query JASPAR database and provides a wrapper of - de novo motif discovery software.""" + TFBSTools is a package for the analysis and manipulation of + transcription factor binding sites. It includes matrices conversion + between Position Frequency Matirx (PFM), Position Weight Matirx (PWM) + and Information Content Matrix (ICM). It can also scan putative TFBS + from sequence/alignment, query JASPAR database and provides a wrapper of + de novo motif discovery software.""" bioc = "TFBSTools" - version('1.34.0', commit='7f8d0cb58a527a5d7ba94a773279f13aedca6ec7') - version('1.32.0', commit='235505626b910de29156a07e1f990daa3b5d57d9') - version('1.28.0', commit='15e7cf76f39ee3280a27284d58f7adef1c33f193') - version('1.22.0', commit='613d3567fd662b65269bd200c5aa5f87ac6a4612') - version('1.20.0', commit='74035fc6beb1af82f171c11ef2b0a8817714c5bc') - version('1.18.0', commit='17e12b9f3dcb9059d414307ec0bc23ed1ee33294') - version('1.16.0', commit='565436a5a674d4dea7279e796a20c5bd2034f65a') - version('1.14.2', commit='e429fdefb6f7ee4585dd2a8ca3d0ced7a5bed4ff') + version("1.34.0", commit="7f8d0cb58a527a5d7ba94a773279f13aedca6ec7") + version("1.32.0", commit="235505626b910de29156a07e1f990daa3b5d57d9") + version("1.28.0", commit="15e7cf76f39ee3280a27284d58f7adef1c33f193") + version("1.22.0", commit="613d3567fd662b65269bd200c5aa5f87ac6a4612") + version("1.20.0", commit="74035fc6beb1af82f171c11ef2b0a8817714c5bc") + version("1.18.0", commit="17e12b9f3dcb9059d414307ec0bc23ed1ee33294") + version("1.16.0", commit="565436a5a674d4dea7279e796a20c5bd2034f65a") + version("1.14.2", commit="e429fdefb6f7ee4585dd2a8ca3d0ced7a5bed4ff") - depends_on('r@3.2.2:', type=('build', 'run')) - depends_on('r-biobase@2.28:', type=('build', 'run')) - depends_on('r-biostrings@2.36.4:', type=('build', 'run')) - depends_on('r-biocgenerics@0.14.0:', type=('build', 'run')) - depends_on('r-biocparallel@1.2.21:', type=('build', 'run')) - depends_on('r-bsgenome@1.36.3:', type=('build', 'run')) - depends_on('r-catools@1.17.1:', type=('build', 'run')) - depends_on('r-cner@1.4.0:', type=('build', 'run')) - depends_on('r-dirichletmultinomial@1.10.0:', type=('build', 'run')) - depends_on('r-genomeinfodb@1.6.1:', type=('build', 'run')) - depends_on('r-genomicranges@1.20.6:', type=('build', 'run')) - depends_on('r-gtools@3.5.0:', type=('build', 'run')) - depends_on('r-iranges@2.2.7:', type=('build', 'run')) - depends_on('r-dbi@0.6:', type=('build', 'run')) - depends_on('r-rsqlite@1.0.0:', type=('build', 'run')) - depends_on('r-rtracklayer@1.28.10:', type=('build', 'run')) - depends_on('r-seqlogo@1.34.0:', type=('build', 'run')) - depends_on('r-s4vectors@0.9.25:', type=('build', 'run')) - depends_on('r-tfmpvalue@0.0.5:', type=('build', 'run')) - depends_on('r-xml@3.98-1.3:', type=('build', 'run')) - depends_on('r-xvector@0.8.0:', type=('build', 'run')) + depends_on("r@3.2.2:", type=("build", "run")) + depends_on("r-biobase@2.28:", type=("build", "run")) + depends_on("r-biostrings@2.36.4:", type=("build", "run")) + depends_on("r-biocgenerics@0.14.0:", type=("build", "run")) + depends_on("r-biocparallel@1.2.21:", type=("build", "run")) + depends_on("r-bsgenome@1.36.3:", type=("build", "run")) + depends_on("r-catools@1.17.1:", type=("build", "run")) + depends_on("r-cner@1.4.0:", type=("build", "run")) + depends_on("r-dirichletmultinomial@1.10.0:", type=("build", "run")) + depends_on("r-genomeinfodb@1.6.1:", type=("build", "run")) + depends_on("r-genomicranges@1.20.6:", type=("build", "run")) + depends_on("r-gtools@3.5.0:", type=("build", "run")) + depends_on("r-iranges@2.2.7:", type=("build", "run")) + depends_on("r-dbi@0.6:", type=("build", "run")) + depends_on("r-rsqlite@1.0.0:", type=("build", "run")) + depends_on("r-rtracklayer@1.28.10:", type=("build", "run")) + depends_on("r-seqlogo@1.34.0:", type=("build", "run")) + depends_on("r-s4vectors@0.9.25:", type=("build", "run")) + depends_on("r-tfmpvalue@0.0.5:", type=("build", "run")) + depends_on("r-xml@3.98-1.3:", type=("build", "run")) + depends_on("r-xvector@0.8.0:", type=("build", "run")) |