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Diffstat (limited to 'var/spack/repos/builtin/packages/r-tmixclust/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-tmixclust/package.py | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-tmixclust/package.py b/var/spack/repos/builtin/packages/r-tmixclust/package.py new file mode 100644 index 0000000000..cbd49587b7 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-tmixclust/package.py @@ -0,0 +1,29 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RTmixclust(RPackage): + """Implementation of a clustering method for time series gene expression + data based on mixed-effects models with Gaussian variables and + non-parametric cubic splines estimation. The method can robustly account + for the high levels of noise present in typical gene expression time + series datasets.""" + + homepage = "https://bioconductor.org/packages/TMixClust/" + git = "https://git.bioconductor.org/packages/TMixClust.git" + + version('1.0.1', commit='0ac800210e3eb9da911767a80fb5582ab33c0cad') + + depends_on('r-gss', type=('build', 'run')) + depends_on('r-mvtnorm', type=('build', 'run')) + depends_on('r-zoo', type=('build', 'run')) + depends_on('r-cluster', type=('build', 'run')) + depends_on('r-biocparallel', type=('build', 'run')) + depends_on('r-flexclust', type=('build', 'run')) + depends_on('r-biobase', type=('build', 'run')) + depends_on('r-spem', type=('build', 'run')) + depends_on('r@3.4.3:3.4.9', when='@1.0.1') |