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Diffstat (limited to 'var/spack/repos/builtin/packages/r-topgo/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-topgo/package.py | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-topgo/package.py b/var/spack/repos/builtin/packages/r-topgo/package.py new file mode 100644 index 0000000000..1997f407c2 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-topgo/package.py @@ -0,0 +1,30 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RTopgo(RPackage): + """topGO package provides tools for testing GO terms while accounting + for the topology of the GO graph. Different test statistics and + different methods for eliminating local similarities and dependencies + between GO terms can be implemented and applied.""" + + homepage = "https://www.bioconductor.org/packages/topGO/" + git = "https://git.bioconductor.org/packages/topGO.git" + + version('2.30.1', commit='b1469ce1d198ccb73ef79ca22cab81659e16dbaa') + version('2.28.0', commit='066a975d460046cce33fb27e74e6a0ebc33fd716') + + depends_on('r@3.4.0:3.4.9') + depends_on('r-dbi', type=('build', 'run')) + depends_on('r-matrixstats', type=('build', 'run')) + depends_on('r-lattice', type=('build', 'run')) + depends_on('r-sparsem@0.73:', type=('build', 'run')) + depends_on('r-annotationdbi@1.7.19:', type=('build', 'run')) + depends_on('r-go-db@2.3.0:', type=('build', 'run')) + depends_on('r-biobase@2.0.0:', type=('build', 'run')) + depends_on('r-graph@1.14.0:', type=('build', 'run')) + depends_on('r-biocgenerics@0.13.6:', type=('build', 'run')) |