diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-tximportdata/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-tximportdata/package.py | 16 |
1 files changed, 11 insertions, 5 deletions
diff --git a/var/spack/repos/builtin/packages/r-tximportdata/package.py b/var/spack/repos/builtin/packages/r-tximportdata/package.py index a85befb5f6..2ebf3b531c 100644 --- a/var/spack/repos/builtin/packages/r-tximportdata/package.py +++ b/var/spack/repos/builtin/packages/r-tximportdata/package.py @@ -7,10 +7,16 @@ from spack import * class RTximportdata(RPackage): - """This packages provides the output of running various transcript abundance - quantifiers on a set of 6 RNA-seq samples from the GEUVADIS project""" + """Import and summarize transcript-level estimates for transcript- and + gene-level analysis - homepage = "http://bioconductor.org/packages/release/data/experiment/html/tximportData.html" - url = "http://bioconductor.org/packages/release/data/experiment/src/contrib/tximportData_1.18.0.tar.gz" + Imports transcript-level abundance, estimated counts and transcript + lengths, and summarizes into matrices for use with downstream gene-level + analysis packages. Average transcript length, weighted by sample-specific + transcript abundance estimates, is provided as a matrix which can be used + as an offset for different expression of gene-level counts.""" - version('1.18.0', sha256='4edf9fdcf5b0086fc958d5ac0249668c7cf7e2fa941cd8d413620634d0cb5971') + homepage = "https://github.com/mikelove/tximport" + git = "https://git.bioconductor.org/packages/tximportData" + + version('1.18.0', commit='24945f8dd1e4e441ad5145fb7a37a1630912f929') |