diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-yapsa/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-yapsa/package.py | 86 |
1 files changed, 43 insertions, 43 deletions
diff --git a/var/spack/repos/builtin/packages/r-yapsa/package.py b/var/spack/repos/builtin/packages/r-yapsa/package.py index a5f0539cbd..49d0df645c 100644 --- a/var/spack/repos/builtin/packages/r-yapsa/package.py +++ b/var/spack/repos/builtin/packages/r-yapsa/package.py @@ -9,49 +9,49 @@ from spack.package import * class RYapsa(RPackage): """Yet Another Package for Signature Analysis. - This package provides functions and routines useful in the analysis of - somatic signatures (cf. L. Alexandrov et al., Nature 2013). In - particular, functions to perform a signature analysis with known - signatures (LCD = linear combination decomposition) and a signature - analysis on stratified mutational catalogue (SMC = stratify mutational - catalogue) are provided.""" + This package provides functions and routines useful in the analysis of + somatic signatures (cf. L. Alexandrov et al., Nature 2013). In + particular, functions to perform a signature analysis with known + signatures (LCD = linear combination decomposition) and a signature + analysis on stratified mutational catalogue (SMC = stratify mutational + catalogue) are provided.""" bioc = "YAPSA" - version('1.22.0', commit='55c2886874f154c737264ce6843089bf3565fa57') - version('1.20.1', commit='6c3f437911859df6f6e4a9af5571c3a5aafbffb2') - version('1.16.0', commit='f344cdb81bb886c633f9325f811912fb59d58eb1') - version('1.10.0', commit='06af18e424868eb0f0be6c80e90cbab1eabf3d73') - version('1.8.0', commit='402f3f7774fdf8afc7883579ad651c26df0f8fdb') - version('1.6.0', commit='2455d272b076835ddb36ad21c01ef15af66abc36') - version('1.4.0', commit='6f24150a0689d5215983975ece96c8c205923c72') - version('1.2.0', commit='320809b69e470e30a777a383f8341f93064ec24d') - - depends_on('r@3.3.0:', type=('build', 'run')) - depends_on('r@3.6.0:', type=('build', 'run'), when='@1.16.0:') - depends_on('r-genomicranges', type=('build', 'run')) - depends_on('r-ggplot2', type=('build', 'run')) - depends_on('r-limsolve', type=('build', 'run'), when='@1.16.0:') - depends_on('r-somaticsignatures', type=('build', 'run')) - depends_on('r-variantannotation', type=('build', 'run')) - depends_on('r-genomeinfodb', type=('build', 'run')) - depends_on('r-reshape2', type=('build', 'run')) - depends_on('r-gridextra', type=('build', 'run')) - depends_on('r-corrplot', type=('build', 'run')) - depends_on('r-dendextend', type=('build', 'run')) - depends_on('r-getoptlong', type=('build', 'run')) - depends_on('r-circlize', type=('build', 'run')) - depends_on('r-gtrellis', type=('build', 'run')) - depends_on('r-doparallel', type=('build', 'run'), when='@1.16.0:') - depends_on('r-pmcmrplus', type=('build', 'run'), when='@1.20.1:') - depends_on('r-ggbeeswarm', type=('build', 'run'), when='@1.16.0:') - depends_on('r-complexheatmap', type=('build', 'run')) - depends_on('r-keggrest', type=('build', 'run')) - depends_on('r-biostrings', type=('build', 'run'), when='@1.16.0:') - depends_on('r-bsgenome-hsapiens-ucsc-hg19', type=('build', 'run'), when='@1.16.0:') - depends_on('r-magrittr', type=('build', 'run'), when='@1.16.0:') - depends_on('r-pracma', type=('build', 'run'), when='@1.16.0:') - depends_on('r-dplyr', type=('build', 'run'), when='@1.16.0:') - - depends_on('r-lsei', type=('build', 'run'), when='@:1.10.0') - depends_on('r-pmcmr', type=('build', 'run'), when='@:1.16.0') + version("1.22.0", commit="55c2886874f154c737264ce6843089bf3565fa57") + version("1.20.1", commit="6c3f437911859df6f6e4a9af5571c3a5aafbffb2") + version("1.16.0", commit="f344cdb81bb886c633f9325f811912fb59d58eb1") + version("1.10.0", commit="06af18e424868eb0f0be6c80e90cbab1eabf3d73") + version("1.8.0", commit="402f3f7774fdf8afc7883579ad651c26df0f8fdb") + version("1.6.0", commit="2455d272b076835ddb36ad21c01ef15af66abc36") + version("1.4.0", commit="6f24150a0689d5215983975ece96c8c205923c72") + version("1.2.0", commit="320809b69e470e30a777a383f8341f93064ec24d") + + depends_on("r@3.3.0:", type=("build", "run")) + depends_on("r@3.6.0:", type=("build", "run"), when="@1.16.0:") + depends_on("r-genomicranges", type=("build", "run")) + depends_on("r-ggplot2", type=("build", "run")) + depends_on("r-limsolve", type=("build", "run"), when="@1.16.0:") + depends_on("r-somaticsignatures", type=("build", "run")) + depends_on("r-variantannotation", type=("build", "run")) + depends_on("r-genomeinfodb", type=("build", "run")) + depends_on("r-reshape2", type=("build", "run")) + depends_on("r-gridextra", type=("build", "run")) + depends_on("r-corrplot", type=("build", "run")) + depends_on("r-dendextend", type=("build", "run")) + depends_on("r-getoptlong", type=("build", "run")) + depends_on("r-circlize", type=("build", "run")) + depends_on("r-gtrellis", type=("build", "run")) + depends_on("r-doparallel", type=("build", "run"), when="@1.16.0:") + depends_on("r-pmcmrplus", type=("build", "run"), when="@1.20.1:") + depends_on("r-ggbeeswarm", type=("build", "run"), when="@1.16.0:") + depends_on("r-complexheatmap", type=("build", "run")) + depends_on("r-keggrest", type=("build", "run")) + depends_on("r-biostrings", type=("build", "run"), when="@1.16.0:") + depends_on("r-bsgenome-hsapiens-ucsc-hg19", type=("build", "run"), when="@1.16.0:") + depends_on("r-magrittr", type=("build", "run"), when="@1.16.0:") + depends_on("r-pracma", type=("build", "run"), when="@1.16.0:") + depends_on("r-dplyr", type=("build", "run"), when="@1.16.0:") + + depends_on("r-lsei", type=("build", "run"), when="@:1.10.0") + depends_on("r-pmcmr", type=("build", "run"), when="@:1.16.0") |