diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/r-yapsa/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-yapsa/package.py | 13 |
1 files changed, 10 insertions, 3 deletions
diff --git a/var/spack/repos/builtin/packages/r-yapsa/package.py b/var/spack/repos/builtin/packages/r-yapsa/package.py index c41dca0f4d..b1f0cd1316 100644 --- a/var/spack/repos/builtin/packages/r-yapsa/package.py +++ b/var/spack/repos/builtin/packages/r-yapsa/package.py @@ -7,18 +7,25 @@ from spack import * class RYapsa(RPackage): - """This package provides functions and routines useful in the analysis of + """Yet Another Package for Signature Analysis. + + This package provides functions and routines useful in the analysis of somatic signatures (cf. L. Alexandrov et al., Nature 2013). In particular, functions to perform a signature analysis with known signatures (LCD = linear combination decomposition) and a signature analysis on stratified mutational catalogue (SMC = stratify mutational catalogue) are provided.""" - homepage = "http://bioconductor.org/packages/YAPSA/" + homepage = "https://bioconductor.org/packages/YAPSA" git = "https://git.bioconductor.org/packages/YAPSA.git" + version('1.10.0', commit='06af18e424868eb0f0be6c80e90cbab1eabf3d73') + version('1.8.0', commit='402f3f7774fdf8afc7883579ad651c26df0f8fdb') + version('1.6.0', commit='2455d272b076835ddb36ad21c01ef15af66abc36') + version('1.4.0', commit='6f24150a0689d5215983975ece96c8c205923c72') version('1.2.0', commit='320809b69e470e30a777a383f8341f93064ec24d') + depends_on('r@3.3.0:', type=('build', 'run')) depends_on('r-genomicranges', type=('build', 'run')) depends_on('r-ggplot2', type=('build', 'run')) depends_on('r-lsei', type=('build', 'run')) @@ -30,8 +37,8 @@ class RYapsa(RPackage): depends_on('r-corrplot', type=('build', 'run')) depends_on('r-dendextend', type=('build', 'run')) depends_on('r-getoptlong', type=('build', 'run')) + depends_on('r-circlize', type=('build', 'run')) depends_on('r-gtrellis', type=('build', 'run')) depends_on('r-pmcmr', type=('build', 'run')) depends_on('r-complexheatmap', type=('build', 'run')) depends_on('r-keggrest', type=('build', 'run')) - depends_on('r@3.4.0:3.4.9', when='@1.2.0') |