diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/raxml/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/raxml/package.py | 128 |
1 files changed, 64 insertions, 64 deletions
diff --git a/var/spack/repos/builtin/packages/raxml/package.py b/var/spack/repos/builtin/packages/raxml/package.py index 1df2c28366..d5244b7db8 100644 --- a/var/spack/repos/builtin/packages/raxml/package.py +++ b/var/spack/repos/builtin/packages/raxml/package.py @@ -14,26 +14,26 @@ class Raxml(Package): """ homepage = "https://sco.h-its.org/exelixis/web/software/raxml" - url = "https://github.com/stamatak/standard-RAxML/archive/v8.2.12.tar.gz" + url = "https://github.com/stamatak/standard-RAxML/archive/v8.2.12.tar.gz" - version('8.2.12', sha256='338f81b52b54e16090e193daf36c1d4baa9b902705cfdc7f4497e3e09718533b') - version('8.2.11', sha256='08cda74bf61b90eb09c229e39b1121c6d95caf182708e8745bd69d02848574d7') + version("8.2.12", sha256="338f81b52b54e16090e193daf36c1d4baa9b902705cfdc7f4497e3e09718533b") + version("8.2.11", sha256="08cda74bf61b90eb09c229e39b1121c6d95caf182708e8745bd69d02848574d7") - variant('mpi', default=True, description='Enable MPI parallel support') - variant('pthreads', default=False, description='Enable pthreads version') + variant("mpi", default=True, description="Enable MPI parallel support") + variant("pthreads", default=False, description="Enable pthreads version") - depends_on('mpi', when='+mpi') + depends_on("mpi", when="+mpi") - patch('nox86.patch') + patch("nox86.patch") # Compiles with either GCC or ICC. - conflicts('%cce') - conflicts('%apple-clang') - conflicts('%clang') - conflicts('%nag') - conflicts('%pgi') - conflicts('%xl') - conflicts('%xl_r') + conflicts("%cce") + conflicts("%apple-clang") + conflicts("%clang") + conflicts("%nag") + conflicts("%pgi") + conflicts("%xl") + conflicts("%xl_r") # can't build multiple binaries in parallel without things breaking parallel = False @@ -43,69 +43,69 @@ class Raxml(Package): files = glob.iglob("Makefile.*") for file in files: makefile = FileFilter(file) - makefile.filter('gcc', spack_cc) - if spec.satisfies('+mpi'): - makefile.filter('mpicc', self.spec['mpi'].mpicc) + makefile.filter("gcc", spack_cc) + if spec.satisfies("+mpi"): + makefile.filter("mpicc", self.spec["mpi"].mpicc) - if spec.target.family == 'x86_64': - if spec.satisfies('+mpi +pthreads') and 'avx' in spec.target: - make('-f', 'Makefile.AVX.HYBRID.gcc') - install('raxmlHPC-HYBRID-AVX', prefix.bin) + if spec.target.family == "x86_64": + if spec.satisfies("+mpi +pthreads") and "avx" in spec.target: + make("-f", "Makefile.AVX.HYBRID.gcc") + install("raxmlHPC-HYBRID-AVX", prefix.bin) - if spec.satisfies('+mpi +pthreads') and 'sse3' in spec.target: - make('-f', 'Makefile.SSE3.HYBRID.gcc') - install('raxmlHPC-HYBRID-SSE3', prefix.bin) + if spec.satisfies("+mpi +pthreads") and "sse3" in spec.target: + make("-f", "Makefile.SSE3.HYBRID.gcc") + install("raxmlHPC-HYBRID-SSE3", prefix.bin) - if spec.satisfies('+mpi +pthreads'): - make('-f', 'Makefile.HYBRID.gcc') - install('raxmlHPC-HYBRID', prefix.bin) + if spec.satisfies("+mpi +pthreads"): + make("-f", "Makefile.HYBRID.gcc") + install("raxmlHPC-HYBRID", prefix.bin) - if spec.satisfies('+mpi') and 'avx' in spec.target: - make('-f', 'Makefile.AVX.MPI.gcc') - install('raxmlHPC-MPI-AVX', prefix.bin) + if spec.satisfies("+mpi") and "avx" in spec.target: + make("-f", "Makefile.AVX.MPI.gcc") + install("raxmlHPC-MPI-AVX", prefix.bin) - if spec.satisfies('+mpi') and 'sse3' in spec.target: - make('-f', 'Makefile.SSE3.MPI.gcc') - install('raxmlHPC-MPI-SSE3', prefix.bin) + if spec.satisfies("+mpi") and "sse3" in spec.target: + make("-f", "Makefile.SSE3.MPI.gcc") + install("raxmlHPC-MPI-SSE3", prefix.bin) - if spec.satisfies('+mpi'): - make('-f', 'Makefile.MPI.gcc') - install('raxmlHPC-MPI', prefix.bin) + if spec.satisfies("+mpi"): + make("-f", "Makefile.MPI.gcc") + install("raxmlHPC-MPI", prefix.bin) - if spec.satisfies('+pthreads') and 'avx' in spec.target: - make('-f', 'Makefile.AVX.PTHREADS.gcc') - install('raxmlHPC-PTHREADS-AVX', prefix.bin) + if spec.satisfies("+pthreads") and "avx" in spec.target: + make("-f", "Makefile.AVX.PTHREADS.gcc") + install("raxmlHPC-PTHREADS-AVX", prefix.bin) - if spec.satisfies('+pthreads') and 'sse3' in spec.target: - make('-f', 'Makefile.SSE3.PTHREADS.gcc') - install('raxmlHPC-PTHREADS-SSE3', prefix.bin) + if spec.satisfies("+pthreads") and "sse3" in spec.target: + make("-f", "Makefile.SSE3.PTHREADS.gcc") + install("raxmlHPC-PTHREADS-SSE3", prefix.bin) - if spec.satisfies('+pthreads'): - make('-f', 'Makefile.PTHREADS.gcc') - install('raxmlHPC-PTHREADS', prefix.bin) + if spec.satisfies("+pthreads"): + make("-f", "Makefile.PTHREADS.gcc") + install("raxmlHPC-PTHREADS", prefix.bin) - if 'sse3' in spec.target: - make('-f', 'Makefile.SSE3.gcc') - install('raxmlHPC-SSE3', prefix.bin) + if "sse3" in spec.target: + make("-f", "Makefile.SSE3.gcc") + install("raxmlHPC-SSE3", prefix.bin) - if 'avx' in spec.target: - make('-f', 'Makefile.AVX.gcc') - install('raxmlHPC-AVX', prefix.bin) + if "avx" in spec.target: + make("-f", "Makefile.AVX.gcc") + install("raxmlHPC-AVX", prefix.bin) - make('-f', 'Makefile.gcc') - install('raxmlHPC', prefix.bin) + make("-f", "Makefile.gcc") + install("raxmlHPC", prefix.bin) else: - if spec.satisfies('+mpi +pthreads'): - make('-f', 'Makefile.HYBRID.nox86.gcc') - install('raxmlHPC-HYBRID', prefix.bin) + if spec.satisfies("+mpi +pthreads"): + make("-f", "Makefile.HYBRID.nox86.gcc") + install("raxmlHPC-HYBRID", prefix.bin) - if spec.satisfies('+mpi'): - make('-f', 'Makefile.MPI.nox86.gcc') - install('raxmlHPC-MPI', prefix.bin) + if spec.satisfies("+mpi"): + make("-f", "Makefile.MPI.nox86.gcc") + install("raxmlHPC-MPI", prefix.bin) - if spec.satisfies('+pthreads'): - make('-f', 'Makefile.PTHREADS.nox86.gcc') - install('raxmlHPC-PTHREADS', prefix.bin) + if spec.satisfies("+pthreads"): + make("-f", "Makefile.PTHREADS.nox86.gcc") + install("raxmlHPC-PTHREADS", prefix.bin) - make('-f', 'Makefile.nox86.gcc') - install('raxmlHPC', prefix.bin) + make("-f", "Makefile.nox86.gcc") + install("raxmlHPC", prefix.bin) |