diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/repeatmasker/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/repeatmasker/package.py | 33 |
1 files changed, 7 insertions, 26 deletions
diff --git a/var/spack/repos/builtin/packages/repeatmasker/package.py b/var/spack/repos/builtin/packages/repeatmasker/package.py index c9713c7892..63d680c2e1 100644 --- a/var/spack/repos/builtin/packages/repeatmasker/package.py +++ b/var/spack/repos/builtin/packages/repeatmasker/package.py @@ -1,30 +1,10 @@ -############################################################################## -# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. -# Produced at the Lawrence Livermore National Laboratory. +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. # -# This file is part of Spack. -# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. -# LLNL-CODE-647188 -# -# For details, see https://github.com/spack/spack -# Please also see the NOTICE and LICENSE files for our notice and the LGPL. -# -# This program is free software; you can redistribute it and/or modify -# it under the terms of the GNU Lesser General Public License (as -# published by the Free Software Foundation) version 2.1, February 1999. -# -# This program is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and -# conditions of the GNU Lesser General Public License for more details. -# -# You should have received a copy of the GNU Lesser General Public -# License along with this program; if not, write to the Free Software -# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA -############################################################################## +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + from spack import * import inspect -import distutils.dir_util class Repeatmasker(Package): @@ -37,6 +17,7 @@ class Repeatmasker(Package): version('4.0.7', '4dcbd7c88c5343e02d819f4b3e6527c6') depends_on('perl', type=('build', 'run')) + depends_on('perl-text-soundex', type=('build', 'run')) depends_on('hmmer') depends_on('ncbi-rmblastn') depends_on('trf') @@ -63,7 +44,7 @@ class Repeatmasker(Package): # Repeatmasker? (Y/N) # Add a Search Engine: Done - config_answers = ['\n', '%s\n' % self.spec['perl'].prefix.bin.perl, + config_answers = ['\n', '%s\n' % self.spec['perl'].command.path, '%s\n' % self.stage.source_path, '%s\n' % self.spec['trf'].prefix.bin.trf, '2\n', '%s\n' % self.spec['ncbi-rmblastn'].prefix.bin, @@ -77,4 +58,4 @@ class Repeatmasker(Package): with open(config_answers_filename, 'r') as f: inspect.getmodule(self).perl('configure', input=f) - distutils.dir_util.copy_tree(".", prefix) + install_tree('.', prefix.bin) |